当前解析结果
SmilChr05G002070| 统一新 Gene ID | SmilChr05G002070 |
|---|---|
| 名称 | SmilChr05G002070 |
| 描述 | uncharacterized SmilChr05G002070 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 21544808 - 21545863 / - |
| NCBI Gene ID | LOC131025649 |
|---|---|
| GeneID | 131025649 |
| locus_tag | - |
| NCBI Name | LOC131025649 |
| 原始查询 | LOC131025649 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=30.1; qcov=0.954; evalue=7.94e-29; confidence=low |
| Rice | Os01g0930300- identity=24.3; qcov=0.866; evalue=3.06e-13; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025649 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057811431.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057811431.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057811431.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057811431.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811431.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:21544815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B9 |
Chr5:21544816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B58,C73 |
Chr5:21544825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C60,D2 |
Chr5:21544854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B68 |
Chr5:21544881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr5:21544891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B58,C34,C73 |
Chr5:21544938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B68,C14 |
Chr5:21544964 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B109,B74,C18 |
Chr5:21545004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B29,B54,B86,C20,C46 |
Chr5:21545006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B109,B69,B74,B9,C18 |
Chr5:21545040 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B48 |
Chr5:21545040 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811431.1PF13966
zf-RVT 45-113 aa
PF13456
RVT_3 217-331 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811431.1 |
Pfam | PF13966 |
zf-RVT | Domain | 45 | 113 | 3.3e-15 | 57.2 | zinc-binding in reverse transcriptase |
XP_057811431.1 |
Pfam | PF13456 |
RVT_3 | Domain | 217 | 331 | 3.4e-17 | 63.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。