当前解析结果
SmilChr05G002153| 统一新 Gene ID | SmilChr05G002153 |
|---|---|
| 名称 | SmilChr05G002153 |
| 描述 | uncharacterized SmilChr05G002153 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 22744894 - 22745601 / - |
| NCBI Gene ID | LOC131025668 |
|---|---|
| GeneID | 131025668 |
| locus_tag | - |
| NCBI Name | LOC131025668 |
| 原始查询 | LOC131025668 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0523701; species=rice; confidence=low |
| 产物 | hit=Os06g0523701; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os06g0523701- identity=34.8; qcov=0.868; evalue=5.1e-39; confidence=low |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025668 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811446.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057811446.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811446.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811446.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811446.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:22744917 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B119,B121 |
Chr5:22744917 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B119,B121 |
Chr5:22744924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,C4 |
Chr5:22744955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,C35,C38 |
Chr5:22744965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B100 |
Chr5:22744977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,B30 |
Chr5:22745033 |
GGT |
G |
2bp_deletion | frameshift_variant | 56 | A1,A19,A2,A24,A4,A5,A8,B101,B110,B111,B135,B136,B137,B18,B28,B34,B35,B38,B39,B40,B44,B59,B60,B64,B66,B69,B7,B70,B71,B88,B89,B9,B94,B97,B99,C11,C13,C14,C19,C22,C24,C30,C34,C42,C46,C54,C60,C62,C67,C69,C72,C76,C77,C8,C87,D4 |
Chr5:22745036 |
T |
TAA |
2bp_insertion | frameshift_variant | 56 | A1,A19,A2,A24,A4,A5,A8,B101,B110,B111,B135,B136,B137,B18,B28,B34,B35,B38,B39,B40,B44,B59,B60,B64,B66,B69,B7,B70,B71,B88,B89,B9,B94,B97,B99,C11,C13,C14,C19,C22,C24,C30,C34,C42,C46,C54,C60,C62,C67,C69,C72,C76,C77,C8,C87,D4 |
Chr5:22745061 |
A |
AT |
1bp_insertion | frameshift_variant | 26 | A16,A19,B103,B120,B129,B130,B131,B136,B140,B15,B26,B29,B5,B55,B6,B60,B63,B74,B83,B95,C18,C27,C33,C37,C71,D5 |
Chr5:22745067 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | B12,B13,B23,C10,C52,D1,D5 |
Chr5:22745083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B133,C15 |
Chr5:22745089 |
C |
T |
EMS_canonical_SNV | stop_gained | 74 | A10,A13,A2,A21,A22,A24,A4,A5,A6,A8,B1,B10,B100,B103,B104,B112,B114,B117,B119,B12,B125,B127,B130,B133,B137,B139,B18,B2,B35,B41,B43,B46,B48,B53,B55,B58,B59,B67,B7,B73,B8,B80,B82,B9,B90,C11,C15,C20,C25,C31,C33,C35,C38,C4,C44,C45,C47,C50,C51,C55,C56,C57,C59,C60,C65,C66,C69,C73,C76,C78,C85,C86,D1,D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。