Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002472`

染色体: Chr01 坐标: 42438770-42443617 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002472`
名称	SmilChr01G002472
描述	amine oxidase [copper-containing] gamma 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	42438770 - 42443617 / `-`

ID 对照

NCBI Gene ID	`LOC131025692`
GeneID	`131025692`
locus_tag	`-`
NCBI Name	`LOC131025692`
原始查询	`LOC131025692`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	amine oxidase [copper-containing] gamma 2-like
产物	amine oxidase [copper-containing] gamma 2-like
Arabidopsis	`AT4G12290` (AT4G12290) Copper amine oxidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826838] identity=66.6; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0338200` (OsDAO1) - identity=44.3; qcov=0.933; evalue=0; confidence=medium
GO	GO:0005507 (copper ion binding); GO:0008131 (primary methylamine oxidase activity); GO:0009308 (amine metabolic process); GO:0048038 (quinone binding)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01179 (Cu_amine_oxid); PF02727 (Cu_amine_oxidN2); PF02728 (Cu_amine_oxidN3)
InterPro	-
eggNOG	-
NR	GeneID:131025692

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.60000	`XP_057811469.1`
2	Secreted	分泌到胞外	0.40000	`XP_057811469.1`
3	Nucleus	细胞核	0.00000	`XP_057811469.1`
4	Chromosome	染色体	0.00000	`XP_057811469.1`
5	Centromere	着丝粒	0.00000	`XP_057811469.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:42438947`	`A`	`ATG`	2bp_insertion	frameshift_variant	143	A10,A11,A13,A14,A19,A2,A20,A21,A23,A24,A25,A4,A5,A7,A8,A9,B1,B101,B105,B106,B108,B109,B110,B112,B115,B122,B124,B125,B126,B127,B128,B129,B130,B132,B134,B136,B137,B138,B14,B140,B15,B16,B17,B18,B19,B20,B22,B23,B24,B26,B29,B3,B31,B33,B34,B35,B37,B38,B39,B4,B40,B44,B46,B47,B48,B51,B53,B54,B56,B57,B58,B63,B67,B68,B70,B71,B72,B73,B74,B75,B77,B79,B80,B81,B84,B87,B88,B89,B90,B92,B93,B94,B95,B96,B99,C1,C11,C12,C15,C16,C18,C21,C22,C24,C26,C28,C29,C30,C33,C34,C36,C38,C4,C43,C44,C46,C47,C49,C5,C50,C54,C58,C61,C62,C63,C64,C66,C67,C70,C71,C73,C77,C78,C8,C80,C81,C82,C85,D1,D3,D5,D8,D9
`Chr1:42439070`	`TC`	`T`	1bp_deletion	frameshift_variant	79	A10,A11,A13,A19,A21,A23,B10,B106,B109,B110,B112,B125,B126,B127,B130,B136,B138,B14,B16,B17,B19,B22,B24,B26,B31,B34,B35,B36,B37,B38,B39,B44,B47,B48,B5,B51,B53,B55,B56,B58,B60,B64,B67,B77,B80,B81,B86,B89,B90,B93,C1,C12,C16,C18,C22,C24,C26,C28,C35,C42,C44,C46,C47,C52,C57,C6,C61,C70,C73,C75,C8,C80,C81,C82,C83,C85,C9,D5,D9
`Chr1:42439239`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D11
`Chr1:42439239`	`GC`	`G`	1bp_deletion	CDS_variant	1	D11
`Chr1:42439241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:42439411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,B85
`Chr1:42439508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B7,C35,C61
`Chr1:42439548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B123,B59
`Chr1:42440800`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C79
`Chr1:42440800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr1:42440801`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	C32,C68
`Chr1:42440801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811469.1

729 aa

364

729

Cu_amine_oxidN2

Cu_amine_oxidN3

Cu_amine_oxid

PF02727 Cu_amine_oxidN2 79-161 aa PF02728 Cu_amine_oxidN3 177-279 aa PF01179 Cu_amine_oxid 304-716 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811469.1`	Pfam	`PF02727`	Cu_amine_oxidN2	Domain	79	161	9.5e-24	84.2	Copper amine oxidase, N2 domain
`XP_057811469.1`	Pfam	`PF02728`	Cu_amine_oxidN3	Domain	177	279	7.1e-27	94.4	Copper amine oxidase, N3 domain
`XP_057811469.1`	Pfam	`PF01179`	Cu_amine_oxid	Domain	304	716	1.5e-131	439.7	Copper amine oxidase, enzyme domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955486.1
ATAATTTCATTTGATCAAAATATAAGCACTGTCACAAAACTCAGACACGCACTTGTATATTATATATCTTATCAATCAGACAATCACTATATTCTTAAAATCACACAATTTGAGTAGAAAACAGTCGGAAATGGAAGCAAGAAGTCTCCTCCGCCGCAGCTTCTTCGTCTTCTCCGCCGTCCTACTCATACTCTTCTCTCTCTCCATCCTCCCATCGCCGCCGTCCCACAAGGCGGCGCTGCTAGATTGCGCAATCCACT...

CDS

1 records

下载 CDS FASTA

LOC131025692
ATGGAAGCAAGAAGTCTCCTCCGCCGCAGCTTCTTCGTCTTCTCCGCCGTCCTACTCATACTCTTCTCTCTCTCCATCCTCCCATCGCCGCCGTCCCACAAGGCGGCGCTGCTAGATTGCGCAATCCACTCCTCCCTCTGCAACTTCAAGAACCGCATCCATTCCAAGAGACCCGGTTTCCTCCAAACACCCACAAACCCCACGCGCCGCCGCCACTCCGCCTCCGTCCCTCACCACCCCCTCGACCCCCTGACACTGAC...

Protein

1 records

下载 Protein FASTA

XP_057811469.1
MEARSLLRRSFFVFSAVLLILFSLSILPSPPSHKAALLDCAIHSSLCNFKNRIHSKRPGFLQTPTNPTRRRHSASVPHHPLDPLTLTEINRVKEIVQKHDFFRNKAYALHSVVLEEPEKQTVLRWRKGDPLPPRKAAVVARAGGESLVLTVELGSGEVVRHEISGQPSGYPTMTVEDMTSATWAPLASADFNRTVVARGVDLADLACLPLSTGWFGKSEENRRLVKVQCYSTKDTANFYMRPIEGLTVVVDLDSHEVLEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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