当前解析结果
SmilChr05G002287| 统一新 Gene ID | SmilChr05G002287 |
|---|---|
| 名称 | SmilChr05G002287 |
| 描述 | uncharacterized SmilChr05G002287 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 24634137 - 24641537 / + |
| NCBI Gene ID | LOC131025698 |
|---|---|
| GeneID | 131025698 |
| locus_tag | - |
| NCBI Name | LOC131025698 |
| 原始查询 | LOC131025698 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=37.1; qcov=0.074; evalue=2.29e-19; confidence=weak |
| Rice | Os04g0191000- identity=29.1; qcov=0.494; evalue=1.64e-89; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025698 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811472.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057811472.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057811472.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057811472.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811472.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:24634190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B26,B61,B64,B8 |
Chr5:24634196 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | A16,B128,B130,B27,B34,B65,B9,B91,B93,C30,C37,C60,C62,C68,C7,C70,C83,C9,D9 |
Chr5:24634213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C18,C29,C72,D2 |
Chr5:24634232 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | C37,C60 |
Chr5:24634232 |
T |
TA |
1bp_insertion | CDS_variant | 2 | C37,C60 |
Chr5:24635614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr5:24635733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr5:24636105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr5:24636115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr5:24636116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr5:24636118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,C17 |
Chr5:24636131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811472.1PF13650
Asp_protease_2 606-700 aa
PF00078
RVT_1 965-1120 aa
PF17919
RT_RNaseH_2 1184-1282 aa
PF17917
RT_RNaseH 1212-1312 aa
PF17921
Integrase_H2C2 1412-1469 aa
PF00665
rve 1490-1583 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811472.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 606 | 700 | 2.7e-06 | 28.7 | Aspartyl protease |
XP_057811472.1 |
Pfam | PF00078 |
RVT_1 | Domain | 965 | 1120 | 1.6e-29 | 103.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811472.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1184 | 1282 | 2.7e-32 | 111.5 | RNase H-like domain found in reverse transcriptase |
XP_057811472.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 1212 | 1312 | 6e-37 | 126.7 | RNase H-like domain found in reverse transcriptase |
XP_057811472.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1412 | 1469 | 6.6e-12 | 46.1 | Integrase zinc binding domain |
XP_057811472.1 |
Pfam | PF00665 |
rve | Domain | 1490 | 1583 | 9.2e-16 | 58.7 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。