当前解析结果
SmilChr05G002344| 统一新 Gene ID | SmilChr05G002344 |
|---|---|
| 名称 | SmilChr05G002344 |
| 描述 | uncharacterized SmilChr05G002344 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 25399604 - 25400746 / - |
| NCBI Gene ID | LOC131025710 |
|---|---|
| GeneID | 131025710 |
| locus_tag | - |
| NCBI Name | LOC131025710 |
| 原始查询 | LOC131025710 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ta11-like non-LTR retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:818757]; symbol=AT2G41590; hit=AT2G41590; species=arabidopsis; confidence=weak |
| 产物 | Ta11-like non-LTR retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:818757]; symbol=AT2G41590; hit=AT2G41590; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G41590 (AT2G41590)Ta11-like non-LTR retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:818757] identity=24.6; qcov=0.897; evalue=3.54e-18; confidence=weak |
| Rice | Os12g0156200- identity=31.1; qcov=0.508; evalue=2.31e-17; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF14111 (DUF4283); PF14392 (zf-CCHC_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025710 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811485.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811485.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057811485.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811485.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811485.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:25399624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D11,D9 |
Chr5:25399625 |
GT |
G |
1bp_deletion | frameshift_variant | 101 | A14,A15,A19,A2,A21,A24,A25,A5,A6,A8,A9,B101,B103,B104,B106,B107,B108,B109,B111,B112,B113,B117,B119,B122,B131,B135,B138,B18,B2,B20,B23,B24,B31,B33,B39,B4,B40,B41,B42,B43,B46,B48,B53,B55,B6,B60,B61,B65,B66,B69,B7,B70,B73,B75,B77,B81,B86,B88,B91,B93,B95,B98,C11,C13,C15,C16,C18,C19,C20,C22,C25,C27,C30,C31,C33,C34,C37,C38,C44,C47,C49,C53,C54,C55,C62,C64,C67,C69,C70,C71,C72,C78,C86,C9,D1,D2,D4,D5,D6,D8,D9 |
Chr5:25399628 |
G |
GT |
1bp_insertion | frameshift_variant | 110 | A14,A15,A19,A2,A21,A24,A25,A5,A6,A8,A9,B1,B101,B102,B103,B104,B105,B106,B107,B108,B109,B111,B112,B113,B117,B119,B121,B122,B131,B135,B138,B18,B2,B20,B23,B24,B31,B32,B33,B37,B39,B4,B40,B41,B42,B43,B46,B48,B53,B55,B6,B60,B61,B65,B66,B67,B69,B7,B70,B71,B73,B75,B77,B81,B86,B88,B93,B95,B98,C11,C13,C15,C16,C18,C19,C20,C22,C25,C27,C30,C31,C33,C34,C37,C38,C41,C44,C45,C47,C49,C53,C54,C55,C62,C64,C67,C69,C70,C71,C72,C78,C86,C87,D1,D2,D4,D5,D6,D8,D9 |
Chr5:25399629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,B139,B71 |
Chr5:25399632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr5:25399636 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B63 |
Chr5:25399636 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B63 |
Chr5:25399638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B106,B139 |
Chr5:25399639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,B83 |
Chr5:25399654 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B106,B139 |
Chr5:25399654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B139 |
Chr5:25399659 |
TC |
T |
1bp_deletion | frameshift_variant | 7 | A8,B113,B2,B20,B98,C15,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811485.1PF14111
DUF4283 26-102 aa
PF14392
zf-CCHC_4 168-213 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811485.1 |
Pfam | PF14111 |
DUF4283 | Domain | 26 | 102 | 1.9e-17 | 63.4 | Domain of unknown function (DUF4283) |
XP_057811485.1 |
Pfam | PF14392 |
zf-CCHC_4 | Domain | 168 | 213 | 1.7e-18 | 66.7 | Zinc knuckle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。