Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002484`

染色体: Chr01 坐标: 42567249-42570302 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002484`
名称	SmilChr01G002484
描述	somatic embryogenesis receptor kinase 5-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	42567249 - 42570302 / `+`

ID 对照

NCBI Gene ID	`LOC131025743`
GeneID	`131025743`
locus_tag	`-`
NCBI Name	`LOC131025743`
原始查询	`LOC131025743`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	somatic embryogenesis receptor kinase 5-like
产物	somatic embryogenesis receptor kinase 5-like
Arabidopsis	`AT4G22730` (AT4G22730) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828369] identity=50.8; qcov=1.04; evalue=0; confidence=high
Rice	`Os08g0117700` - identity=46.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131025743

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811514.1`
2	Nucleus	细胞核	0.00000	`XP_057811514.1`
3	Chromosome	染色体	0.00000	`XP_057811514.1`
4	Centromere	着丝粒	0.00000	`XP_057811514.1`
5	Chromatin	染色质	0.00000	`XP_057811514.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:42567625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr1:42567723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B126,B61,B65
`Chr1:42567748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,C83
`Chr1:42568258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B30,C8,C83
`Chr1:42568287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:42568351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,C28
`Chr1:42568726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr1:42568774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:42568781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B64,C2,C4
`Chr1:42568857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B7
`Chr1:42568889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B97,C13
`Chr1:42569078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811514.1

653 aa

326

653

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 26-66 aa PF00560 LRR_1 95-116 aa PF00560 LRR_1 119-140 aa PF00560 LRR_1 142-163 aa PF13855 LRR_8 142-201 aa PF00560 LRR_1 166-188 aa PF00560 LRR_1 191-211 aa PF00560 LRR_1 214-236 aa PF00069 Pkinase 387-648 aa PF07714 PK_Tyr_Ser-Thr 389-650 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811514.1`	Pfam	`PF08263`	LRRNT_2	Family	26	66	2.7e-09	37.9	Leucine rich repeat N-terminal domain
`XP_057811514.1`	Pfam	`PF00560`	LRR_1	Repeat	95	116	5.7e-17	58.9	Leucine Rich Repeat
`XP_057811514.1`	Pfam	`PF00560`	LRR_1	Repeat	119	140	5.7e-17	58.9	Leucine Rich Repeat
`XP_057811514.1`	Pfam	`PF00560`	LRR_1	Repeat	142	163	5.7e-17	58.9	Leucine Rich Repeat
`XP_057811514.1`	Pfam	`PF13855`	LRR_8	Repeat	142	201	2e-15	57.0	Leucine rich repeat
`XP_057811514.1`	Pfam	`PF00560`	LRR_1	Repeat	166	188	5.7e-17	58.9	Leucine Rich Repeat
`XP_057811514.1`	Pfam	`PF00560`	LRR_1	Repeat	191	211	5.7e-17	58.9	Leucine Rich Repeat
`XP_057811514.1`	Pfam	`PF00560`	LRR_1	Repeat	214	236	5.7e-17	58.9	Leucine Rich Repeat
`XP_057811514.1`	Pfam	`PF00069`	Pkinase	Domain	387	648	1.5e-33	117.0	Protein kinase domain
`XP_057811514.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	389	650	2.7e-40	139.1	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955531.1
CACCAATTAAGGCAATAATTAATATTCCCATCGTTCACTACTGCAAACAGAATAGAAAATTTAGATACAAAAGACAAAGGCTGGAAACCTGCTCTTCACCAGTATTTCAAAAATACAAGTAGTGTAGAATAGTTTCTACAAAAATAAAAATAAAAATAAAAAATACAACTGTAGAATGTGCATGCATGTGTTTATACGCTCCAAAAGTCGTAACCTCTCTCACCCTTTCCCCACTCTCTCTCTCTCTCTTCGCTGCTCTT...

CDS

1 records

下载 CDS FASTA

LOC131025743
ATGCAGAAGAATCCCGTGTTGATTCTCATCGTGGTCAGCGTTGCATGTTCTCTTTCCATAAACCTGGTTTGCGGGAACGCAGAGCTGAAAGCGTTGATGGAGATAAAGGCGTCGTTGGATCCGGGAAACAAGCGGCTCTCGTCGTGGACGGCCGACAGCGACCCGTGCGGCGGCGCCTTCCAGGGAGTGGCCTGCAACGAGCACAGGAAGGTGGCCAACATCTCGCTGCAGGGAATGGGCCTCGCCGGAAGCGTGCCGGC...

Protein

1 records

下载 Protein FASTA

XP_057811514.1
MQKNPVLILIVVSVACSLSINLVCGNAELKALMEIKASLDPGNKRLSSWTADSDPCGGAFQGVACNEHRKVANISLQGMGLAGSVPAAVAELKCLSGLYLHYNSLSGEIPREIANLTELTDLYLNVNNLTGNIPPEIGSMASLQVLQLCCNNLTGNIPTEVGFLKKLSVLALENNRITGQIPGSLGNLGMLKRLYLNSNHLSGPIPIRLANVVSLQVLDVRNNTLSGVVPLALRRLNEEFHFENNPGLCGSGFPSLRACT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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