当前解析结果
SmilChr05G002557| 统一新 Gene ID | SmilChr05G002557 |
|---|---|
| 名称 | SmilChr05G002557 |
| 描述 | uncharacterized SmilChr05G002557 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 28703940 - 28705015 / + |
| NCBI Gene ID | LOC131025753 |
|---|---|
| GeneID | 131025753 |
| locus_tag | - |
| NCBI Name | LOC131025753 |
| 原始查询 | LOC131025753 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os07g0267400; species=rice; confidence=low |
| 产物 | hit=Os07g0267400; species=rice; confidence=low |
| Arabidopsis | AT1G40087 (AT1G40087)Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721] identity=27.4; qcov=0.785; evalue=1.9e-08; confidence=low |
| Rice | Os07g0267400- identity=27.6; qcov=0.981; evalue=9.99e-14; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025753 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811523.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811523.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811523.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811523.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811523.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:28703976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C75 |
Chr5:28704035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr5:28704048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:28704074 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr5:28704105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B35 |
Chr5:28704204 |
TGG |
T |
2bp_deletion | frameshift_variant | 1 | A18 |
Chr5:28704204 |
TGG |
T |
2bp_deletion | CDS_variant | 1 | A18 |
Chr5:28704303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr5:28704332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C75 |
Chr5:28704361 |
C |
T |
EMS_canonical_SNV | stop_gained | 154 | A1,A10,A11,A14,A15,A16,A20,A23,A24,A25,A4,A5,A6,A7,A8,A9,B10,B100,B101,B103,B105,B106,B107,B108,B111,B113,B114,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B129,B131,B133,B136,B137,B138,B139,B14,B16,B18,B19,B20,B22,B24,B26,B28,B30,B31,B36,B37,B38,B39,B4,B44,B46,B48,B49,B5,B53,B55,B58,B59,B6,B60,B62,B63,B64,B66,B67,B69,B7,B70,B71,B72,B74,B75,B76,B79,B82,B85,B86,B88,B9,B90,B92,B95,B97,B98,C1,C10,C14,C15,C17,C18,C19,C20,C21,C22,C23,C25,C27,C28,C30,C31,C32,C33,C34,C36,C37,C40,C41,C42,C44,C47,C49,C5,C51,C53,C54,C57,C59,C6,C60,C61,C63,C64,C65,C66,C67,C68,C7,C70,C74,C76,C78,C79,C80,C81,C83,C84,C86,C9,D1,D10,D3,D5,D8 |
Chr5:28704362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr5:28704374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B79,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。