Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002494`

染色体: Chr01 坐标: 42685787-42690214 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002494`
名称	SmilChr01G002494
描述	uncharacterized SmilChr01G002494
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	42685787 - 42690214 / `-`

ID 对照

NCBI Gene ID	`LOC131025848`
GeneID	`131025848`
locus_tag	`-`
NCBI Name	`LOC131025848`
原始查询	`LOC131025848`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837793]; symbol=AT1G12380; hit=AT1G12380; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837793]; symbol=AT1G12380; hit=AT1G12380; species=arabidopsis; confidence=high
Arabidopsis	`AT1G12380` (AT1G12380) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837793] identity=58.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os04g0261400` - identity=51.1; qcov=1.01; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF25908 (DUF7963)
InterPro	-
eggNOG	-
NR	GeneID:131025848

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811618.1`
2	Chromosome	染色体	0.00000	`XP_057811618.1`
3	Centromere	着丝粒	0.00000	`XP_057811618.1`
4	Chromatin	染色质	0.00000	`XP_057811618.1`
5	Telomere	端粒	0.00000	`XP_057811618.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:42686354`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B140,C13
`Chr1:42687519`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:42687539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr1:42687540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr1:42687926`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B104
`Chr1:42688154`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr1:42688238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:42688514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:42688553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr1:42688587`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,C70
`Chr1:42688993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr1:42689176`	`G`	`GCT`	2bp_insertion	frameshift_variant	1	B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811618.1

779 aa

390

779

DUF7963

PF25908 DUF7963 22-104 aa

XP_057811623.1

777 aa

388

777

DUF7963

PF25908 DUF7963 22-104 aa

XP_057811627.1

772 aa

386

772

DUF7963

PF25908 DUF7963 22-104 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811618.1`	Pfam	`PF25908`	DUF7963	Domain	22	104	9.6e-47	157.7	Domain of unknown function (DUF7963)
`XP_057811623.1`	Pfam	`PF25908`	DUF7963	Domain	22	104	9.6e-47	157.7	Domain of unknown function (DUF7963)
`XP_057811627.1`	Pfam	`PF25908`	DUF7963	Domain	22	104	9.5e-47	157.7	Domain of unknown function (DUF7963)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057955644.1
GTAGTTGCGAAAAAATGATATTGTAAGAAATGAAAACATAGTACAGTCCATGAATAGTTGCAGGGCGCGTGTTTGTAATAATATACTTCTGTTAGAACCAGCCAAACTCAACTACATCATACCATATTCCTCTCTCTCTCTCTCTCCTCTCCGTTTCTCTGTCTACACTAACTCCATTGCTCTCTCTCTCTCTCCCCCTCTGCTGTTAGCTATAAATTCGAAGCCTCCAAAATTAAGCTGAATTTCCCCGCAATCATTCC...

XM_057955635.1
TTGTAAGAAATGAAAACATAGTACAGTCCATGAATAGTTGCAGGGCGCGTGTTTGTAATAATATACTTCTGTTAGAACCAGCCAAACTCAACTACATCATACCATATTCCTCTCTCTCTCTCTCTCCTCTCCGTTTCTCTGTCTACACTAACTCCATTGCTCTCTCTCTCTCTCCCCCTCTGCTGTTAGCTATAAATTCGAAGCCTCCAAAATTAAGCTGAATTTCCCCGCAATCATTCCTCAAACCCCCCCCCCCCCCC...

CDS

3 records

下载 CDS FASTA

LOC131025848
ATGGCGGCGAGCAACGCCGGCGGCGTGACGGGCACGACGACGGTGGAGTCGAGCGGGGTGTCCTCGGACGAGCTCGCGGCGAAGGTGGCCCACAAGAGGTTCGAAGGGCTGGTGATGGTACGGACGAAGGCGATTAAGGGGAAAGGCGCGTGGTACTGGGCCCACCTGGAGCCGATTCTCGTCCACAACTCCGACACCGGCCTCCCCAAGGCCGTCAAGCTCCGCTGCTCCCTCTGCGACGCCGTCTTCTCCGCCTCCAA...

Protein

3 records

下载 Protein FASTA

XP_057811618.1
MAASNAGGVTGTTTVESSGVSSDELAAKVAHKRFEGLVMVRTKAIKGKGAWYWAHLEPILVHNSDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFASTPKPISSVPSSPSLSVATASVSPPPQNHRKRSSGTRAAANSSGIASPFSAQHVPPLTIVDPSKFTVDLSYPPGGAPIASPSPSPGVGIAIASGSQQQLVLSGGREDLGALAMLEDSVKRLKSPKSWAGPTLNKAQAESALDLLADWVYDCCGSV...

XP_057811623.1
MAASNAGGVTGTTTVESSGVSSDELAAKVAHKRFEGLVMVRTKAIKGKGAWYWAHLEPILVHNSDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFASTPKPISSVPSSPSLSVATASVSPPPQNHRKRSSGTRAAANSSGIASPFSAQHVPPLTIVDPSKFTVDLSYPPGGAPIASPSPSPGVGIAIASGSQQQLVLSGGREDLGALAMLEDSVKRLKSPKSWAGPTLNKAQAESALDLLADWVYDCCGSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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