当前解析结果
SmilChr05G002994| 统一新 Gene ID | SmilChr05G002994 |
|---|---|
| 名称 | SmilChr05G002994 |
| 描述 | uncharacterized SmilChr05G002994 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 36760165 - 36762168 / + |
| NCBI Gene ID | LOC131025866 |
|---|---|
| GeneID | 131025866 |
| locus_tag | - |
| NCBI Name | LOC131025866 |
| 原始查询 | LOC131025866 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=weak |
| 产物 | hit=Os04g0191000; species=rice; confidence=weak |
| Arabidopsis | AT5G51080 (AT5G51080)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:835181] identity=27.5; qcov=0.14; evalue=6.25e-06; confidence=weak |
| Rice | Os04g0191000- identity=22.9; qcov=0.796; evalue=8.34e-13; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025866 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811635.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057811635.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057811635.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811635.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811635.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:36760319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,B138 |
Chr5:36760327 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B102,B123,B138,C60 |
Chr5:36760327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B102,B123,B138,C60 |
Chr5:36760347 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr5:36760359 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B27,C74 |
Chr5:36760360 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | A1,B27,B64,C74 |
Chr5:36760360 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B27,B64,C74 |
Chr5:36760400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C30,C35,C5,C76 |
Chr5:36760408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,C73 |
Chr5:36760413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,C16,C33 |
Chr5:36760460 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A16,C52 |
Chr5:36760460 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A16,C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811635.1PF17919
RT_RNaseH_2 15-100 aa
PF17917
RT_RNaseH 53-129 aa
PF13456
RVT_3 165-283 aa
PF00665
rve 420-517 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811635.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 15 | 100 | 2.9e-12 | 47.2 | RNase H-like domain found in reverse transcriptase |
XP_057811635.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 53 | 129 | 7.8e-13 | 49.2 | RNase H-like domain found in reverse transcriptase |
XP_057811635.1 |
Pfam | PF13456 |
RVT_3 | Domain | 165 | 283 | 1.5e-13 | 51.5 | Reverse transcriptase-like |
XP_057811635.1 |
Pfam | PF00665 |
rve | Domain | 420 | 517 | 2.6e-17 | 63.6 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。