Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003014`

染色体: Chr05 坐标: 37531518-37549276 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003014`
名称	SmilChr05G003014
描述	uncharacterized SmilChr05G003014
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	37531518 - 37549276 / `-`

ID 对照

NCBI Gene ID	`LOC131025875`
GeneID	`131025875`
locus_tag	`-`
NCBI Name	`LOC131025875`
原始查询	`LOC131025875`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os04g0191000; species=rice; confidence=low
产物	hit=Os04g0191000; species=rice; confidence=low
Arabidopsis	`ATMG00860` - identity=40.2; qcov=0.085; evalue=6.09e-18; confidence=weak
Rice	`Os04g0191000` - identity=34.6; qcov=0.556; evalue=5.42e-94; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding); GO:0015074 (DNA integration)
KEGG	-
Pfam	PF00098 (zf-CCHC); PF00665 (rve); PF03732 (PEG10_N-capsid); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF24626 (SH3_Tf2-1); PF30863 (PRO_PEG10-RTL1); PF30901 (PEG10-RTL1_C-capsid)
InterPro	-
eggNOG	-
NR	GeneID:131025875

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057811643.1`
2	Cytosol	细胞质基质	0.60000	`XP_057811643.1`
3	Nucleus	细胞核	0.40000	`XP_057811643.1`
4	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057811643.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057811643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:37531578`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B51
`Chr5:37531578`	`AG`	`A`	1bp_deletion	CDS_variant	1	B51
`Chr5:37545288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr5:37545422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C34
`Chr5:37545423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr5:37545490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B137,B93,C2,C31
`Chr5:37545513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr5:37545538`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B6,B83,C7
`Chr5:37545552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B128,B67,C84
`Chr5:37545563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B57
`Chr5:37545580`	`G`	`A`	EMS_canonical_SNV	stop_gained	8	A20,B16,B31,B43,B54,C22,C60,C82
`Chr5:37545640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811643.1

1138 aa

569

1138

PEG10_N-capsid

PEG10-RTL1_C-capsid

zf-CCHC

Asp_protease_2

PRO_PEG10-RTL1

RT_RNaseH_2

RT_RNaseH

Integrase_H2C2

rve

SH3_Tf2-1

PF03732 PEG10_N-capsid 71-153 aa PF30901 PEG10-RTL1_C-capsid 163-236 aa PF00098 zf-CCHC 293-310 aa PF13650 Asp_protease_2 373-458 aa PF30863 PRO_PEG10-RTL1 380-458 aa PF17919 RT_RNaseH_2 612-706 aa PF17917 RT_RNaseH 637-736 aa PF17921 Integrase_H2C2 773-830 aa PF00665 rve 850-940 aa PF24626 SH3_Tf2-1 1017-1076 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811643.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	71	153	4.3e-20	72.6	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057811643.1`	Pfam	`PF30901`	PEG10-RTL1_C-capsid	Domain	163	236	1.4e-08	35.3	PEG10/RTL1, C-terminal capsid-like domain
`XP_057811643.1`	Pfam	`PF00098`	zf-CCHC	Domain	293	310	0.0001	22.9	Zinc knuckle
`XP_057811643.1`	Pfam	`PF13650`	Asp_protease_2	Domain	373	458	2.3e-05	25.8	Aspartyl protease
`XP_057811643.1`	Pfam	`PF30863`	PRO_PEG10-RTL1	Domain	380	458	8.7e-08	33.3	PEG10/RTL1 protease domain
`XP_057811643.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	612	706	4.3e-31	107.7	RNase H-like domain found in reverse transcriptase
`XP_057811643.1`	Pfam	`PF17917`	RT_RNaseH	Domain	637	736	1.8e-33	115.5	RNase H-like domain found in reverse transcriptase
`XP_057811643.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	773	830	1.2e-17	64.4	Integrase zinc binding domain
`XP_057811643.1`	Pfam	`PF00665`	rve	Domain	850	940	6.5e-09	36.7	Integrase core domain
`XP_057811643.1`	Pfam	`PF24626`	SH3_Tf2-1	Domain	1017	1076	2.9e-17	63.2	Tf2-1-like, SH3 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955660.1
ATGTCTAAGAAAGATGAACAGGGTGCGGATGTGAGCGATGGCCCTGTTATGGATCCACAGTTGAAACTCGTAGTGGAGGCACTTCGCTCAGAATTTGGCAAGATGTTACACTCAGAAATCGAGGGAGTGTACGACAAGATCGAGCTGATGGAGCAGTCTCATTCTCGAGAGACCACTTTCACACGAGGAGATAACAATCTGGGCAATATTAAGATGAACGTTCCGCCCTTCCAAGGGAAGAATGATCCAGAATTGTATCT...

CDS

1 records

下载 CDS FASTA

LOC131025875
ATGTCTAAGAAAGATGAACAGGGTGCGGATGTGAGCGATGGCCCTGTTATGGATCCACAGTTGAAACTCGTAGTGGAGGCACTTCGCTCAGAATTTGGCAAGATGTTACACTCAGAAATCGAGGGAGTGTACGACAAGATCGAGCTGATGGAGCAGTCTCATTCTCGAGAGACCACTTTCACACGAGGAGATAACAATCTGGGCAATATTAAGATGAACGTTCCGCCCTTCCAAGGGAAGAATGATCCAGAATTGTATCT...

Protein

1 records

下载 Protein FASTA

XP_057811643.1
MSKKDEQGADVSDGPVMDPQLKLVVEALRSEFGKMLHSEIEGVYDKIELMEQSHSRETTFTRGDNNLGNIKMNVPPFQGKNDPELYLDWERKVELMFDCHNYSELKKVKLAAIEFSDYALVWWDQMVTSRRRNSEPPIQTWQEMKAVMRKRFVPNHYYRELFNKLQTLRQGSRSVDEYYKEMEVAMIRANVVEEREATMARFLTGLHWDIRDKVELQHYVELEDMVHMAIKIENQLKRRGNNISNGSSSKGNQWKKEAPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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