当前解析结果
SmilChr05G003052| 统一新 Gene ID | SmilChr05G003052 |
|---|---|
| 名称 | SmilChr05G003052 |
| 描述 | thioredoxin-like protein CDSP32, chloroplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 38276181 - 38276762 / - |
| NCBI Gene ID | LOC131025888 |
|---|---|
| GeneID | 131025888 |
| locus_tag | - |
| NCBI Name | LOC131025888 |
| 原始查询 | LOC131025888 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | thioredoxin-like protein CDSP32, chloroplastic |
| 产物 | thioredoxin-like protein CDSP32%2C chloroplastic |
| Arabidopsis | AT1G76080 (CDSP32)chloroplastic drought-induced stress protein of 32 kD [Source:NCBI gene (formerly Entrezgene);Acc:843940] identity=50.7; qcov=0.993; evalue=6.81e-44; confidence=medium |
| Rice | Os07g0476900 (CDSP32)- identity=49.7; qcov=1; evalue=9.73e-44; confidence=medium |
| GO | GO:0016671 (oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025888 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057811651.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057811651.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057811651.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811651.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811651.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:38276230 |
T |
TC |
1bp_insertion | frameshift_variant | 130 | A11,A13,A14,A15,A16,A18,A2,A20,A5,A6,A7,B1,B10,B100,B103,B105,B108,B109,B11,B110,B114,B117,B12,B120,B123,B127,B129,B13,B14,B140,B16,B18,B2,B20,B24,B26,B28,B3,B30,B32,B34,B36,B37,B4,B41,B42,B43,B45,B47,B49,B50,B54,B55,B59,B60,B61,B62,B63,B64,B66,B68,B69,B72,B73,B75,B76,B77,B78,B79,B8,B80,B82,B85,B86,B87,B9,B90,B91,B92,B93,B94,B95,C10,C13,C14,C15,C18,C2,C20,C21,C27,C28,C30,C34,C35,C37,C39,C45,C46,C48,C49,C50,C51,C53,C56,C57,C60,C61,C62,C63,C65,C71,C72,C74,C75,C76,C77,C79,C81,C82,C83,C84,C85,D1,D10,D11,D3,D4,D8,D9 |
Chr5:38276402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr5:38276414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B42 |
Chr5:38276435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C42 |
Chr5:38276438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr5:38276447 |
G |
A |
EMS_canonical_SNV | stop_gained | 31 | A16,B103,B120,B125,B14,B18,B30,B41,B6,B63,B72,B8,B82,B85,B86,B90,B91,B92,B95,B97,C13,C14,C18,C21,C37,C54,C63,C70,C77,C79,C83 |
Chr5:38276459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,B54 |
Chr5:38276460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr5:38276523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr5:38276618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:38276619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:38276622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,D4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。