当前解析结果
SmilChr05G003102| 统一新 Gene ID | SmilChr05G003102 |
|---|---|
| 名称 | SmilChr05G003102 |
| 描述 | uncharacterized SmilChr05G003102 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 39423328 - 39425985 / + |
| NCBI Gene ID | LOC131025909 |
|---|---|
| GeneID | 131025909 |
| locus_tag | - |
| NCBI Name | LOC131025909 |
| 原始查询 | LOC131025909 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0106900; species=rice; confidence=medium |
| 产物 | hit=Os08g0106900; species=rice; confidence=medium |
| Arabidopsis | AT5G35695 (AT5G35695)nuclease HARBI1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833543] identity=59.5; qcov=0.316; evalue=2.94e-67; confidence=low |
| Rice | Os08g0106900- identity=39; qcov=0.648; evalue=9.73e-80; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF01609 (DDE_Tnp_1); PF12776 (Myb_DNA-bind_3); PF13359 (DDE_Tnp_4); PF26138 (DUF8040) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025909 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811671.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811671.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811671.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811671.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811671.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:39423350 |
A |
AT |
1bp_insertion | frameshift_variant | 5 | A13,B15,B3,B84,C23 |
Chr5:39423350 |
A |
AT |
1bp_insertion | CDS_variant | 5 | A13,B15,B3,B84,C23 |
Chr5:39423353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B103,B97,C52 |
Chr5:39423361 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C71 |
Chr5:39423361 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C71 |
Chr5:39423369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr5:39423401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B140,B56,C80 |
Chr5:39423408 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B6,C40,C56 |
Chr5:39423408 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B6,C40,C56 |
Chr5:39423430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B52,C29,C7 |
Chr5:39423440 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A15,B64,B81,C22 |
Chr5:39423440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B64,B81,C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811671.1PF12776
Myb_DNA-bind_3 18-114 aa
PF26138
DUF8040 262-323 aa
PF01609
DDE_Tnp_1 353-499 aa
PF13359
DDE_Tnp_4 359-520 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811671.1 |
Pfam | PF12776 |
Myb_DNA-bind_3 | Domain | 18 | 114 | 3e-18 | 67.3 | Myb/SANT-like DNA-binding domain |
XP_057811671.1 |
Pfam | PF26138 |
DUF8040 | Domain | 262 | 323 | 3.1e-12 | 46.9 | Domain of unknown function (DUF8040) |
XP_057811671.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 353 | 499 | 1.9e-09 | 38.3 | Transposase DDE domain |
XP_057811671.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 359 | 520 | 1.8e-24 | 86.9 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。