当前解析结果
SmilChr05G003185| 统一新 Gene ID | SmilChr05G003185 |
|---|---|
| 名称 | SmilChr05G003185 |
| 描述 | uncharacterized SmilChr05G003185 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 40758979 - 40760955 / + |
| NCBI Gene ID | LOC131025933 |
|---|---|
| GeneID | 131025933 |
| locus_tag | - |
| NCBI Name | LOC131025933 |
| 原始查询 | LOC131025933 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319]; symbol=AT3G01410; hit=AT3G01410; species=arabidopsis; confidence=weak |
| 产物 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319]; symbol=AT3G01410; hit=AT3G01410; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=33.7; qcov=0.18; evalue=6.48e-06; confidence=weak |
| Rice | -- |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025933 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057811695.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057811695.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057811695.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811695.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811695.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:40758985 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B104 |
Chr5:40758985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:40759043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:40759049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B15,B71,C6,C83 |
Chr5:40759091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr5:40759110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B13,B4,C76,D4 |
Chr5:40759123 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A7,B17,B40,B69,B9,B91,C12,C33,D11 |
Chr5:40759124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr5:40759137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:40759140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:40759147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B13,B4,C76,D4 |
Chr5:40759157 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811695.1PF17917
RT_RNaseH 2-66 aa
PF13456
RVT_3 101-200 aa
PF00665
rve 278-363 aa
PF31073
DUF8803 415-476 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811695.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 2 | 66 | 2.8e-07 | 31.4 | RNase H-like domain found in reverse transcriptase |
XP_057811695.1 |
Pfam | PF13456 |
RVT_3 | Domain | 101 | 200 | 3.5e-15 | 56.7 | Reverse transcriptase-like |
XP_057811695.1 |
Pfam | PF00665 |
rve | Domain | 278 | 363 | 2e-14 | 54.4 | Integrase core domain |
XP_057811695.1 |
Pfam | PF31073 |
DUF8803 | Domain | 415 | 476 | 1.9e-21 | 76.4 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。