当前解析结果
SmilChr05G003484| 统一新 Gene ID | SmilChr05G003484 |
|---|---|
| 名称 | SmilChr05G003484 |
| 描述 | uncharacterized SmilChr05G003484 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 46295431 - 46296483 / + |
| NCBI Gene ID | LOC131026010 |
|---|---|
| GeneID | 131026010 |
| locus_tag | - |
| NCBI Name | LOC131026010 |
| 原始查询 | LOC131026010 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0587600; species=rice; confidence=weak |
| 产物 | hit=Os03g0587600; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os03g0587600- identity=50; qcov=0.109; evalue=7.98e-07; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026010 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057811772.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057811772.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811772.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811772.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811772.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:46295451 |
TGA |
T |
2bp_deletion | frameshift_variant | 137 | A10,A11,A14,A18,A19,A2,A20,A21,A23,A3,A4,A5,A6,A7,A8,A9,B10,B101,B102,B103,B105,B106,B108,B110,B111,B112,B114,B118,B120,B123,B126,B128,B131,B132,B135,B136,B16,B17,B21,B22,B23,B24,B25,B26,B28,B29,B3,B30,B33,B36,B38,B40,B41,B43,B47,B49,B53,B54,B55,B58,B59,B60,B62,B63,B64,B66,B67,B68,B69,B7,B71,B72,B75,B79,B8,B80,B83,B84,B85,B86,B88,B9,B91,B98,C1,C11,C12,C13,C14,C17,C18,C2,C20,C21,C23,C27,C3,C32,C33,C34,C35,C37,C38,C4,C40,C43,C46,C5,C50,C54,C55,C56,C57,C58,C60,C61,C64,C68,C7,C70,C72,C74,C75,C76,C79,C8,C80,C82,C83,C84,C86,D1,D10,D3,D5,D8,D9 |
Chr5:46295458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B103 |
Chr5:46295496 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B34 |
Chr5:46295496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr5:46295500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B34 |
Chr5:46295516 |
A |
AT |
1bp_insertion | frameshift_variant | 7 | A14,A4,B102,B75,C27,C73,D3 |
Chr5:46295555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B120,B58 |
Chr5:46295564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr5:46295569 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | D10 |
Chr5:46295569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:46295572 |
C |
T |
EMS_canonical_SNV | stop_gained | 53 | A11,A20,A21,A23,A24,B1,B102,B113,B121,B132,B17,B22,B23,B25,B28,B36,B38,B42,B43,B56,B59,B63,B65,B69,B72,B78,B83,B84,B91,B94,B96,C10,C14,C15,C21,C24,C34,C37,C50,C52,C54,C61,C70,C72,C73,C82,C83,C84,C87,D10,D2,D5,D6 |
Chr5:46295574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C19,C51,C65,C80 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。