当前解析结果
SmilChr05G003702| 统一新 Gene ID | SmilChr05G003702 |
|---|---|
| 名称 | SmilChr05G003702 |
| 描述 | uncharacterized SmilChr05G003702 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 50112735 - 50115205 / + |
| NCBI Gene ID | LOC131026083 |
|---|---|
| GeneID | 131026083 |
| locus_tag | - |
| NCBI Name | LOC131026083 |
| 原始查询 | LOC131026083 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=32; qcov=0.417; evalue=1.08e-47; confidence=low |
| Rice | Os06g0484800- identity=34.4; qcov=0.521; evalue=9.51e-71; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026083 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811840.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811840.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057811840.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811840.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811840.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:50112762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr5:50112764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr5:50112822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,B92 |
Chr5:50112898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B58,B76,B94 |
Chr5:50112951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr5:50112958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B131,B34,B36,B92 |
Chr5:50112994 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | B113,B125,B75,C14 |
Chr5:50112994 |
A |
AT |
1bp_insertion | CDS_variant | 4 | B113,B125,B75,C14 |
Chr5:50112999 |
C |
T |
EMS_canonical_SNV | stop_gained | 17 | A4,B107,B134,B41,B44,B47,B7,B71,B85,C30,C43,C46,C66,C71,C80,C84,D1 |
Chr5:50113045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr5:50113072 |
ATT |
A |
2bp_deletion | frameshift_variant | 10 | A1,A9,B32,B92,C21,C36,C38,C43,C66,D11 |
Chr5:50113076 |
C |
CAG |
2bp_insertion | frameshift_variant | 10 | A1,A9,B32,B92,C21,C36,C38,C43,C66,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811840.1PF00078
RVT_1 20-241 aa
PF13966
zf-RVT 500-593 aa
PF13456
RVT_3 644-764 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811840.1 |
Pfam | PF00078 |
RVT_1 | Domain | 20 | 241 | 2e-15 | 57.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811840.1 |
Pfam | PF13966 |
zf-RVT | Domain | 500 | 593 | 1.3e-16 | 61.7 | zinc-binding in reverse transcriptase |
XP_057811840.1 |
Pfam | PF13456 |
RVT_3 | Domain | 644 | 764 | 3.4e-19 | 69.7 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。