当前解析结果
SmilChr05G004014| 统一新 Gene ID | SmilChr05G004014 |
|---|---|
| 名称 | SmilChr05G004014 |
| 描述 | uncharacterized SmilChr05G004014 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54082776 - 54084684 / - |
| NCBI Gene ID | LOC131026125 |
|---|---|
| GeneID | 131026125 |
| locus_tag | - |
| NCBI Name | LOC131026125 |
| 原始查询 | LOC131026125 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0125300; species=rice; confidence=weak |
| 产物 | hit=Os08g0125300; species=rice; confidence=weak |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=41.2; qcov=0.145; evalue=2.03e-06; confidence=weak |
| Rice | Os08g0125300- identity=48.3; qcov=0.165; evalue=1.73e-12; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026125 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811878.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057811878.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811878.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811878.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811878.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54082783 |
CT |
C |
1bp_deletion | frameshift_variant | 19 | A23,B10,B104,B125,B128,B134,B138,B140,B24,B75,B8,B97,C11,C20,C68,C69,C84,C85,D1 |
Chr5:54082856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,B52 |
Chr5:54082887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,D4 |
Chr5:54082943 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:54083416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B3,B98,C59 |
Chr5:54083601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C56 |
Chr5:54083610 |
C |
CAA |
2bp_insertion | frameshift_variant | 1 | B135 |
Chr5:54083610 |
C |
CAA |
2bp_insertion | CDS_variant | 1 | B135 |
Chr5:54083898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr5:54083928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:54084039 |
G |
GTC |
2bp_insertion | frameshift_variant | 38 | A22,A3,A4,A7,A8,B105,B107,B108,B113,B12,B120,B130,B136,B36,B40,B55,B63,B69,B77,B82,B88,B97,C11,C17,C2,C26,C38,C43,C45,C53,C6,C69,C84,C86,D1,D10,D3,D8 |
Chr5:54084078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B43,B59,B62,C37,C73 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。