Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004115`

染色体: Chr05 坐标: 55003746-55006348 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004115`
名称	SmilChr05G004115
描述	protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	55003746 - 55006348 / `+`

ID 对照

NCBI Gene ID	`LOC131026136`
GeneID	`131026136`
locus_tag	`-`
NCBI Name	`LOC131026136`
原始查询	`LOC131026136`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 5-like
产物	protein FAR1-RELATED SEQUENCE 5-like
Arabidopsis	`AT4G38180` (FRS5) FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=33; qcov=0.558; evalue=3.36e-67; confidence=low
Rice	`Os06g0166100` - identity=31.6; qcov=0.826; evalue=4.71e-95; confidence=low
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro	-
eggNOG	-
NR	GeneID:131026136

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811889.1`
2	Chromosome	染色体	0.00000	`XP_057811889.1`
3	Centromere	着丝粒	0.00000	`XP_057811889.1`
4	Chromatin	染色质	0.00000	`XP_057811889.1`
5	Telomere	端粒	0.00000	`XP_057811889.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:55003925`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B129,B28,B35,B5
`Chr5:55003927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr5:55003960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:55003962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:55003977`	`CA`	`C`	1bp_deletion	frameshift_variant	20	A18,A4,A7,B127,B128,B133,B26,B29,B52,B61,B91,B97,C31,C37,C43,C46,C71,C78,C81,D8
`Chr5:55003997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:55004028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B138,C20,C9
`Chr5:55004041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,C85
`Chr5:55004064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B57,B71,C2
`Chr5:55004091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B19,B50,C81
`Chr5:55004096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:55004106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B38,B39,C12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811889.1

728 aa

364

728

FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 103-191 aa PF21056 ZSWIM1-3_RNaseH-like 288-397 aa PF10551 MULE 314-408 aa PF04434 SWIM 537-558 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811889.1`	Pfam	`PF03101`	FAR1	Domain	103	191	3.3e-19	70.1	FAR1 DNA-binding domain
`XP_057811889.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	288	397	1.3e-09	38.8	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057811889.1`	Pfam	`PF10551`	MULE	Domain	314	408	1.8e-26	93.1	MULE transposase domain
`XP_057811889.1`	Pfam	`PF04434`	SWIM	Domain	537	558	8.2e-05	22.8	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955906.1
ATGGCCGAGGAGCAAAAGAAGTTGTCCAGGGAAAGCATTGATTTGAATCGAGTACTGGGTTTCAAAGATAGTGAAGACGAGGTCCCAAGCGGTCCAAAAAATGATCCAAAAGAGCCGTCTGATGCGGCTGAAGAAAATGTAGAGTTTCACTCTGCAGCACATGAATGTGACGAGAATGGTGAAGATGGTGTTTCTGGTGAGAAGGATGCACGTGATGAAGCTCTTGATAATTTATCCATTCCCGAATGGGAGGAAATGCT...

CDS

1 records

下载 CDS FASTA

LOC131026136
ATGGCCGAGGAGCAAAAGAAGTTGTCCAGGGAAAGCATTGATTTGAATCGAGTACTGGGTTTCAAAGATAGTGAAGACGAGGTCCCAAGCGGTCCAAAAAATGATCCAAAAGAGCCGTCTGATGCGGCTGAAGAAAATGTAGAGTTTCACTCTGCAGCACATGAATGTGACGAGAATGGTGAAGATGGTGTTTCTGGTGAGAAGGATGCACGTGATGAAGCTCTTGATAATTTATCCATTCCCGAATGGGAGGAAATGCT...

Protein

1 records

下载 Protein FASTA

XP_057811889.1
MAEEQKKLSRESIDLNRVLGFKDSEDEVPSGPKNDPKEPSDAAEENVEFHSAAHECDENGEDGVSGEKDARDEALDNLSIPEWEEMLVVGSTLDTNLVHIFGYYLKYSHKKGFSVRRGDQKRFGQRGDIRLKQFICSSSGLTDMKRQKRSLGVYKKMVTRTNCAAELVVSRKDEGPFVVSVFETVHNHELMATDMSYMLRSNRNLNIGHQSVLQAMKEAGIGISVACKFMEKESGGVPNVGFTRKDAYNHIDRVKRLSKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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