当前解析结果
SmilChr05G004148| 统一新 Gene ID | SmilChr05G004148 |
|---|---|
| 名称 | SmilChr05G004148 |
| 描述 | E3 ubiquitin-protein ligase MPSR1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 55408094 - 55408672 / - |
| NCBI Gene ID | LOC131026147 |
|---|---|
| GeneID | 131026147 |
| locus_tag | - |
| NCBI Name | LOC131026147 |
| 原始查询 | LOC131026147 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase MPSR1-like |
| 产物 | E3 ubiquitin-protein ligase MPSR1-like |
| Arabidopsis | AT1G26800 (AT1G26800)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839223] identity=42.4; qcov=0.885; evalue=1.53e-38; confidence=medium |
| Rice | Os01g0276600 (OsSTA11)- identity=48.9; qcov=0.469; evalue=2.37e-23; confidence=medium |
| GO | GO:0005737 (cytoplasm); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026147 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057811899.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057811899.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057811899.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811899.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811899.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:55408103 |
ACT |
A |
2bp_deletion | frameshift_variant | 16 | A3,B120,B132,B26,B28,B29,B68,B87,B94,C12,C31,C33,C44,C72,D3,D8 |
Chr5:55408128 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | A23,B53 |
Chr5:55408128 |
G |
GA |
1bp_insertion | CDS_variant | 2 | A23,B53 |
Chr5:55408232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr5:55408329 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C24 |
Chr5:55408329 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C24 |
Chr5:55408337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,C52 |
Chr5:55408376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr5:55408400 |
CG |
C |
1bp_deletion | frameshift_variant | 4 | A25,B26,B77,B93 |
Chr5:55408400 |
CG |
C |
1bp_deletion | CDS_variant | 4 | A25,B26,B77,B93 |
Chr5:55408411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr5:55408452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811899.1PF17123
zf-RING_11 106-134 aa
PF13923
zf-C3HC4_2 106-147 aa
PF13639
zf-RING_2 106-148 aa
PF00097
zf-C3HC4 107-147 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811899.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 106 | 134 | 9.4e-09 | 35.5 | RING-like zinc finger |
XP_057811899.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 106 | 147 | 1.5e-09 | 38.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057811899.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 106 | 148 | 9e-15 | 55.4 | Ring finger domain |
XP_057811899.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 107 | 147 | 6.6e-08 | 33.0 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。