当前解析结果
SmilChr05G004291| 统一新 Gene ID | SmilChr05G004291 |
|---|---|
| 名称 | SmilChr05G004291 |
| 描述 | protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 56670996 - 56672303 / - |
| NCBI Gene ID | LOC131026168 |
|---|---|
| GeneID | 131026168 |
| locus_tag | - |
| NCBI Name | LOC131026168 |
| 原始查询 | LOC131026168 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7-like |
| 产物 | protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7-like |
| Arabidopsis | AT5G18520 (Cand7)Lung seven transmembrane receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:831970] identity=31.1; qcov=0.975; evalue=4.95e-61; confidence=low |
| Rice | Os01g0836800- identity=28.3; qcov=0.936; evalue=3.13e-53; confidence=low |
| GO | GO:0005794 (Golgi apparatus); GO:0006810 (transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF06814 (GOST_TM); PF21904 (CAND6-7_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026168 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057811920.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057811920.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057811920.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057811920.1 |
| 5 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057811920.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:56671019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:56671146 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B86 |
Chr5:56671146 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B86 |
Chr5:56671177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr5:56671302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:56671399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr5:56671407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr5:56671498 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B4,C60 |
Chr5:56671498 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B4,C60 |
Chr5:56671502 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B4,C60 |
Chr5:56671502 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B4,C60 |
Chr5:56671950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057811920.1PF21904
CAND6-7_N 31-150 aa
PF06814
GOST_TM 173-388 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811920.1 |
Pfam | PF21904 |
CAND6-7_N | Domain | 31 | 150 | 5.9e-17 | 62.8 | CAND6/7, N-terminal domain |
XP_057811920.1 |
Pfam | PF06814 |
GOST_TM | Domain | 173 | 388 | 7.4e-10 | 39.6 | GOST, seven transmembrane domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。