Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002237`

染色体: Chr05 坐标: 23983384-23990903 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002237`
名称	SmilChr05G002237
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	23983384 - 23990903 / `+`

ID 对照

NCBI Gene ID	`LOC131026184`
GeneID	`131026184`
locus_tag	`-`
NCBI Name	`LOC131026184`
原始查询	`LOC131026184`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT1G58390` (AT1G58390) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=33.5; qcov=0.971; evalue=6.66e-134; confidence=low
Rice	`Os07g0186500` - identity=28.6; qcov=0.977; evalue=1.67e-73; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00560 (LRR_1); PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026184

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811939.1`
2	Cytosol	细胞质基质	0.20000	`XP_057811944.1`
3	Nucleus	细胞核	0.00000	`XP_057811939.1`
4	Chromosome	染色体	0.00000	`XP_057811939.1`
5	Centromere	着丝粒	0.00000	`XP_057811939.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:23988182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811939.1

941 aa

470

941

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_1

PF18052 Rx_N 8-88 aa PF00931 NB-ARC 180-334 aa PF23559 WHD_DRP 430-505 aa PF23598 LRR_14 588-903 aa PF00560 LRR_1 623-644 aa

XP_057811940.1

941 aa

470

941

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_1

PF18052 Rx_N 8-88 aa PF00931 NB-ARC 180-334 aa PF23559 WHD_DRP 430-505 aa PF23598 LRR_14 588-903 aa PF00560 LRR_1 623-644 aa

XP_057811941.1

941 aa

470

941

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_1

PF18052 Rx_N 8-88 aa PF00931 NB-ARC 180-334 aa PF23559 WHD_DRP 430-505 aa PF23598 LRR_14 588-903 aa PF00560 LRR_1 623-644 aa

XP_057811942.1

941 aa

470

941

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_1

PF18052 Rx_N 8-88 aa PF00931 NB-ARC 180-334 aa PF23559 WHD_DRP 430-505 aa PF23598 LRR_14 588-903 aa PF00560 LRR_1 623-644 aa

XP_057811943.1

941 aa

470

941

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_1

PF18052 Rx_N 8-88 aa PF00931 NB-ARC 180-334 aa PF23559 WHD_DRP 430-505 aa PF23598 LRR_14 588-903 aa PF00560 LRR_1 623-644 aa

XP_057811944.1

901 aa

450

901

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_1

PF18052 Rx_N 1-48 aa PF00931 NB-ARC 140-294 aa PF23559 WHD_DRP 390-465 aa PF23598 LRR_14 548-863 aa PF00560 LRR_1 583-604 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811939.1`	Pfam	`PF18052`	Rx_N	Domain	8	88	5.3e-18	65.6	Rx N-terminal domain
`XP_057811939.1`	Pfam	`PF00931`	NB-ARC	Domain	180	334	3.2e-31	108.9	NB-ARC domain
`XP_057811939.1`	Pfam	`PF23559`	WHD_DRP	Domain	430	505	7.3e-13	49.1	Disease resistance protein Winged helix domain
`XP_057811939.1`	Pfam	`PF23598`	LRR_14	Repeat	588	903	1.3e-32	113.7	Leucine-rich repeat region
`XP_057811939.1`	Pfam	`PF00560`	LRR_1	Repeat	623	644	0.00021	21.5	Leucine Rich Repeat
`XP_057811940.1`	Pfam	`PF18052`	Rx_N	Domain	8	88	5.3e-18	65.6	Rx N-terminal domain
`XP_057811940.1`	Pfam	`PF00931`	NB-ARC	Domain	180	334	3.2e-31	108.9	NB-ARC domain
`XP_057811940.1`	Pfam	`PF23559`	WHD_DRP	Domain	430	505	7.3e-13	49.1	Disease resistance protein Winged helix domain
`XP_057811940.1`	Pfam	`PF23598`	LRR_14	Repeat	588	903	1.3e-32	113.7	Leucine-rich repeat region
`XP_057811940.1`	Pfam	`PF00560`	LRR_1	Repeat	623	644	0.00021	21.5	Leucine Rich Repeat
`XP_057811941.1`	Pfam	`PF18052`	Rx_N	Domain	8	88	5.3e-18	65.6	Rx N-terminal domain
`XP_057811941.1`	Pfam	`PF00931`	NB-ARC	Domain	180	334	3.2e-31	108.9	NB-ARC domain
`XP_057811941.1`	Pfam	`PF23559`	WHD_DRP	Domain	430	505	7.3e-13	49.1	Disease resistance protein Winged helix domain
`XP_057811941.1`	Pfam	`PF23598`	LRR_14	Repeat	588	903	1.3e-32	113.7	Leucine-rich repeat region
`XP_057811941.1`	Pfam	`PF00560`	LRR_1	Repeat	623	644	0.00021	21.5	Leucine Rich Repeat
`XP_057811942.1`	Pfam	`PF18052`	Rx_N	Domain	8	88	5.3e-18	65.6	Rx N-terminal domain
`XP_057811942.1`	Pfam	`PF00931`	NB-ARC	Domain	180	334	3.2e-31	108.9	NB-ARC domain
`XP_057811942.1`	Pfam	`PF23559`	WHD_DRP	Domain	430	505	7.3e-13	49.1	Disease resistance protein Winged helix domain
`XP_057811942.1`	Pfam	`PF23598`	LRR_14	Repeat	588	903	1.3e-32	113.7	Leucine-rich repeat region
`XP_057811942.1`	Pfam	`PF00560`	LRR_1	Repeat	623	644	0.00021	21.5	Leucine Rich Repeat
`XP_057811943.1`	Pfam	`PF18052`	Rx_N	Domain	8	88	5.3e-18	65.6	Rx N-terminal domain
`XP_057811943.1`	Pfam	`PF00931`	NB-ARC	Domain	180	334	3.2e-31	108.9	NB-ARC domain
`XP_057811943.1`	Pfam	`PF23559`	WHD_DRP	Domain	430	505	7.3e-13	49.1	Disease resistance protein Winged helix domain
`XP_057811943.1`	Pfam	`PF23598`	LRR_14	Repeat	588	903	1.3e-32	113.7	Leucine-rich repeat region
`XP_057811943.1`	Pfam	`PF00560`	LRR_1	Repeat	623	644	0.00021	21.5	Leucine Rich Repeat
`XP_057811944.1`	Pfam	`PF18052`	Rx_N	Domain	1	48	1.6e-08	35.2	Rx N-terminal domain
`XP_057811944.1`	Pfam	`PF00931`	NB-ARC	Domain	140	294	3e-31	109.0	NB-ARC domain
`XP_057811944.1`	Pfam	`PF23559`	WHD_DRP	Domain	390	465	6.8e-13	49.2	Disease resistance protein Winged helix domain
`XP_057811944.1`	Pfam	`PF23598`	LRR_14	Repeat	548	863	1.4e-32	113.6	Leucine-rich repeat region
`XP_057811944.1`	Pfam	`PF00560`	LRR_1	Repeat	583	604	0.00018	21.7	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057955956.1
CAAAAAGGGGGTGCCAATATAAATTTGCATCTGCAAAACCACAATAAAAAATGGACCAAAACCAGAATCAAAAAGTGGGAAGTATTGGTTTGTATGGGGGGACACGTGGCGCAAGATCAAGGGCCCTGCGTAGTGAGCGGCCGCCTAGGGTAGACAAAGCCCAAAATAGTGTGTTTTATTGCTTATGATGTCTGCACAATTGAGGTGGTTCTGAATCCTACACTCCTTCGATTATGAACTTGAAAGAACTGGCTGGAAAG...

XM_057955957.1
CAAAAAGGGGGTGCCAATATAAATTTGCATCTGCAAAACCACAATAAAAAATGGACCAAAACCAGAATCAAAAAGTGGGAAGTATTGGTTTGTATGGGGGGACACGTGGCGCAAGATCAAGGGCCCTGCGTAGTGAGCGGCCGCCTAGGGTAGACAAAGCCCAAAATAGTGTGTTTTATTGCTTATGATGTCTGCACAATTGAGGTGGTTCTGAATCCTACACTCCTTCGATTATGAACTTGAAAGAACTGGCTGGAAAG...

CDS

6 records

下载 CDS FASTA

LOC131026184
ATGGCTGAATCAGCAATCCTTGTTGCTTTAGAAACCCTTCGGAATCTGCTGCTTGATGAAGCAAAATTCTTGTCTGGGGTGGGCAGTCAAGTGAAGGGATTGGAATCGCAGCTCAAAGAGATGCAGTGTCTGCTAGAGGACACTGACAGATCAAGACAACACAAAAGCAAGAGCGTTGGTTATTGGATTCTAGAAATCAGAGATCTTGTGTACCAAGCTGAAGATGTGATTGAAATGTATTCGGTTGTTCAAGTTTCTTC...

Protein

6 records

下载 Protein FASTA

XP_057811939.1
MAESAILVALETLRNLLLDEAKFLSGVGSQVKGLESQLKEMQCLLEDTDRSRQHKSKSVGYWILEIRDLVYQAEDVIEMYSVVQVSSRSGRGIRQFCQRFSCLPNRCCSLYKIGWEISEIRSAIGRVYKSIHEYGLRSIIQEENSGPASENQRWQRKTYSFETSDCFVGMEEDLKRLVSLTVDDNLNRVISVWGMGGLGKTTIVRKVYNHVDVKHAFDSFAWVCITQQCQIRFVLEEVIKQLMPQQKEHAMHLSDTELVE...

XP_057811940.1
MAESAILVALETLRNLLLDEAKFLSGVGSQVKGLESQLKEMQCLLEDTDRSRQHKSKSVGYWILEIRDLVYQAEDVIEMYSVVQVSSRSGRGIRQFCQRFSCLPNRCCSLYKIGWEISEIRSAIGRVYKSIHEYGLRSIIQEENSGPASENQRWQRKTYSFETSDCFVGMEEDLKRLVSLTVDDNLNRVISVWGMGGLGKTTIVRKVYNHVDVKHAFDSFAWVCITQQCQIRFVLEEVIKQLMPQQKEHAMHLSDTELVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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