Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002422`

染色体: Chr05 坐标: 26713059-26717618 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002422`
名称	SmilChr05G002422
描述	uncharacterized SmilChr05G002422
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26713059 - 26717618 / `-`

ID 对照

NCBI Gene ID	`LOC131026193`
GeneID	`131026193`
locus_tag	`-`
NCBI Name	`LOC131026193`
原始查询	`LOC131026193`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821009]; symbol=AT3G17450; hit=AT3G17450; species=arabidopsis; confidence=high
产物	hAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821009]; symbol=AT3G17450; hit=AT3G17450; species=arabidopsis; confidence=high
Arabidopsis	`AT3G17450` (AT3G17450) hAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821009] identity=56.5; qcov=0.951; evalue=0; confidence=high
Rice	`Os09g0499600` - identity=32.2; qcov=0.806; evalue=1.94e-120; confidence=low
GO	GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF02892 (zf-BED); PF04937 (DUF659); PF05699 (Dimer_Tnp_hAT); PF26664 (zf-BED_2)
InterPro	-
eggNOG	-
NR	GeneID:131026193

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811951.1`
2	Chromosome	染色体	0.00000	`XP_057811951.1`
3	Centromere	着丝粒	0.00000	`XP_057811951.1`
4	Chromatin	染色质	0.00000	`XP_057811951.1`
5	Telomere	端粒	0.00000	`XP_057811951.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26713439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr5:26713453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr5:26714054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C69,C76
`Chr5:26715174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,D3
`Chr5:26715604`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,C53,D6
`Chr5:26715731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr5:26715934`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr5:26716487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr5:26716760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B139,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811951.1

897 aa

448

897

zf-BED

zf-BED_2

zf-BED

zf-BED_2

DUF659

Dimer_Tnp_hAT

PF02892 zf-BED 14-49 aa PF26664 zf-BED_2 22-71 aa PF02892 zf-BED 138-173 aa PF26664 zf-BED_2 146-195 aa PF04937 DUF659 344-495 aa PF05699 Dimer_Tnp_hAT 715-785 aa

XP_057811952.1

897 aa

448

897

zf-BED

zf-BED_2

zf-BED

zf-BED_2

DUF659

Dimer_Tnp_hAT

PF02892 zf-BED 14-49 aa PF26664 zf-BED_2 22-71 aa PF02892 zf-BED 138-173 aa PF26664 zf-BED_2 146-195 aa PF04937 DUF659 344-495 aa PF05699 Dimer_Tnp_hAT 715-785 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811951.1`	Pfam	`PF02892`	zf-BED	Domain	14	49	3.1e-15	56.6	BED zinc finger
`XP_057811951.1`	Pfam	`PF26664`	zf-BED_2	Domain	22	71	8.7e-35	118.9	BED-like zinc finger
`XP_057811951.1`	Pfam	`PF02892`	zf-BED	Domain	138	173	3.1e-15	56.6	BED zinc finger
`XP_057811951.1`	Pfam	`PF26664`	zf-BED_2	Domain	146	195	8.7e-35	118.9	BED-like zinc finger
`XP_057811951.1`	Pfam	`PF04937`	DUF659	Domain	344	495	1.1e-58	197.9	Domain of unknown function (DUF659)
`XP_057811951.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	715	785	6.3e-10	39.4	hAT family C-terminal dimerisation region
`XP_057811952.1`	Pfam	`PF02892`	zf-BED	Domain	14	49	3.1e-15	56.6	BED zinc finger
`XP_057811952.1`	Pfam	`PF26664`	zf-BED_2	Domain	22	71	8.7e-35	118.9	BED-like zinc finger
`XP_057811952.1`	Pfam	`PF02892`	zf-BED	Domain	138	173	3.1e-15	56.6	BED zinc finger
`XP_057811952.1`	Pfam	`PF26664`	zf-BED_2	Domain	146	195	8.7e-35	118.9	BED-like zinc finger
`XP_057811952.1`	Pfam	`PF04937`	DUF659	Domain	344	495	1.1e-58	197.9	Domain of unknown function (DUF659)
`XP_057811952.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	715	785	6.3e-10	39.4	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955969.1
ATTAGAGTTTGGGATATACGAAAGGAAAAAAGAAAAATTCTAATCAGCTGAAAGGGCATAAAAGAAAATACCATTAAATATATATAAACACTTTTTGAAAAAGAAAAGAAAAAAAGGAGTGGGGGCAGCGCCGTGTCCACTCAGAGAGTCACGATTCCCAAATCCGAAACCCTAGAGATAGAGAAGCCAATTCCGCGTCCACTCAGAGACTCACGATTCCCTCACCCTCGACTCGTTGCTTACTTCCGATCCTTGTCAAT...

XM_057955968.1
AAAGAAAAAAAGGAGTGGGGGCAGCGCCGTGTCCACTCAGAGAGTCACGATTCCCAAATCCGAAACCCTAGAGATAGAGAAGCCAATTCCGCGTCCACTCAGAGACTCACGATTCCCTCACCCTCGACTCGTTGCTTACTTCCGATCCTTGTCAATTTTTCATTTTCTGTTTCTTCAACATTTCCTCACCATCTTCCTTCGTTCAGGTATGCACAATTCAAGTTAAAACCCAATGGTTACCTCTTTTTTAGCTGATGCCA...

CDS

2 records

下载 CDS FASTA

LOC131026193
ATGGCATCGCATCGCACTTCCGGTTACATCGACCCGGGTTGGGATCACGGTGTTGCTCAAGATGACAAAAAGAAAAAGGTTAGATGCAATTACTGTGGCAAAGTTGTTAGCGGCGGAATCTACAGACTGAAGCAACACCTTGCCCGGCTTTCTGGTGAAGTAACTTACTGTGATAAAGCTCCAGAAGAGGTGCGTCTCAAAATGAGGGAGAATTTAGAGGGGTGTCGTATTGGTAAGAAATCCAGGTACAATGAGTACGA...

Protein

2 records

下载 Protein FASTA

XP_057811951.1
MASHRTSGYIDPGWDHGVAQDDKKKKVRCNYCGKVVSGGIYRLKQHLARLSGEVTYCDKAPEEVRLKMRENLEGCRIGKKSRYNEYEEQSYLNFNAADDLEEEEHFGYRKKGKQLSIDKDLAVNMTPLRSLGYVDPGWEHGVPQDDRKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKNAPEDVYLKIKENMRWHRTGRRHRRPDTKEISTFYMDSENEDEDQEEEAVYPMGNDKLIIGDRRFDRDFKRTSKGLSA...

XP_057811952.1
MASHRTSGYIDPGWDHGVAQDDKKKKVRCNYCGKVVSGGIYRLKQHLARLSGEVTYCDKAPEEVRLKMRENLEGCRIGKKSRYNEYEEQSYLNFNAADDLEEEEHFGYRKKGKQLSIDKDLAVNMTPLRSLGYVDPGWEHGVPQDDRKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKNAPEDVYLKIKENMRWHRTGRRHRRPDTKEISTFYMDSENEDEDQEEEAVYPMGNDKLIIGDRRFDRDFKRTSKGLSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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