当前解析结果
SmilChr05G002435| 统一新 Gene ID | SmilChr05G002435 |
|---|---|
| 名称 | SmilChr05G002435 |
| 描述 | uncharacterized SmilChr05G002435 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 26831516 - 26832531 / + |
| NCBI Gene ID | LOC131026208 |
|---|---|
| GeneID | 131026208 |
| locus_tag | - |
| NCBI Name | LOC131026208 |
| 原始查询 | LOC131026208 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827765]; symbol=AT4G20190; hit=AT4G20190; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827765]; symbol=AT4G20190; hit=AT4G20190; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G20190 (AT4G20190)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827765] identity=35.3; qcov=1.24; evalue=1.07e-36; confidence=medium |
| Rice | Os06g0574000- identity=29; qcov=1.18; evalue=7.78e-15; confidence=low |
| GO | GO:0009535 (chloroplast thylakoid membrane); GO:0048564 (photosystem I assembly); GO:0080183 (response to photooxidative stress) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026208 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057811970.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057811970.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057811970.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811970.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811970.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:26831517 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | B106,B139,C36,C43 |
Chr5:26831517 |
TG |
T |
1bp_deletion | CDS_variant | 4 | B106,B139,C36,C43 |
Chr5:26831601 |
A |
AG |
1bp_insertion | frameshift_variant | 5 | A11,A3,C73,C75,D6 |
Chr5:26831601 |
A |
AG |
1bp_insertion | CDS_variant | 5 | A11,A3,C73,C75,D6 |
Chr5:26831702 |
CCA |
C |
2bp_deletion | frameshift_variant | 15 | A18,B103,B106,B2,B26,B65,B69,B91,C19,C28,C32,C35,C37,C68,D4 |
Chr5:26831715 |
CGA |
C |
2bp_deletion | frameshift_variant | 69 | A10,A15,A2,A20,A23,A25,A3,A5,A7,B10,B104,B107,B110,B12,B121,B124,B125,B127,B132,B139,B17,B21,B22,B33,B38,B39,B42,B43,B44,B48,B49,B58,B59,B68,B7,B77,B78,B79,B82,B89,B9,B93,B97,C1,C11,C12,C16,C23,C24,C36,C4,C43,C45,C48,C51,C52,C6,C65,C69,C75,C78,C79,C8,C80,C84,D1,D11,D3,D7 |
Chr5:26831758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr5:26831821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B68,C48,C75 |
Chr5:26831849 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B26 |
Chr5:26831849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr5:26831878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr5:26831885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。