Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002435

染色体: Chr05 坐标: 26831516-26832531 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002435
名称SmilChr05G002435
描述uncharacterized SmilChr05G002435
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向26831516 - 26832531 / +

ID 对照

NCBI Gene IDLOC131026208
GeneID131026208
locus_tag-
NCBI NameLOC131026208
原始查询LOC131026208

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827765]; symbol=AT4G20190; hit=AT4G20190; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827765]; symbol=AT4G20190; hit=AT4G20190; species=arabidopsis; confidence=medium
ArabidopsisAT4G20190 (AT4G20190)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827765]
identity=35.3; qcov=1.24; evalue=1.07e-36; confidence=medium
RiceOs06g0574000
-
identity=29; qcov=1.18; evalue=7.78e-15; confidence=low
GOGO:0009535 (chloroplast thylakoid membrane); GO:0048564 (photosystem I assembly); GO:0080183 (response to photooxidative stress)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131026208

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057811970.1
2 Nucleus 细胞核 0.60000 XP_057811970.1
3 Cytosol 细胞质基质 0.20000 XP_057811970.1
4 Chromosome 染色体 0.00000 XP_057811970.1
5 Centromere 着丝粒 0.00000 XP_057811970.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:26831517 TG T 1bp_deletion frameshift_variant 4 B106,B139,C36,C43
Chr5:26831517 TG T 1bp_deletion CDS_variant 4 B106,B139,C36,C43
Chr5:26831601 A AG 1bp_insertion frameshift_variant 5 A11,A3,C73,C75,D6
Chr5:26831601 A AG 1bp_insertion CDS_variant 5 A11,A3,C73,C75,D6
Chr5:26831702 CCA C 2bp_deletion frameshift_variant 15 A18,B103,B106,B2,B26,B65,B69,B91,C19,C28,C32,C35,C37,C68,D4
Chr5:26831715 CGA C 2bp_deletion frameshift_variant 69 A10,A15,A2,A20,A23,A25,A3,A5,A7,B10,B104,B107,B110,B12,B121,B124,B125,B127,B132,B139,B17,B21,B22,B33,B38,B39,B42,B43,B44,B48,B49,B58,B59,B68,B7,B77,B78,B79,B82,B89,B9,B93,B97,C1,C11,C12,C16,C23,C24,C36,C4,C43,C45,C48,C51,C52,C6,C65,C69,C75,C78,C79,C8,C80,C84,D1,D11,D3,D7
Chr5:26831758 G A EMS_canonical_SNV CDS_variant 1 B17
Chr5:26831821 C T EMS_canonical_SNV CDS_variant 4 B33,B68,C48,C75
Chr5:26831849 C T EMS_canonical_SNV stop_gained 1 B26
Chr5:26831849 C T EMS_canonical_SNV CDS_variant 1 B26
Chr5:26831878 C T EMS_canonical_SNV CDS_variant 1 B86
Chr5:26831885 G A EMS_canonical_SNV CDS_variant 1 C82

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057955987.1
ATGAGTCCCTCGGCTGCAACTATGGGTATGATTCAAGAATCTCCTAAAAAAACAGCCTTGGAGAAGAAGGAAAGCATTGAGAAGGAGAGGCAGATTTCTGTTGATCCAATATCTATGCAGCCCAAAACGGAGGTGACACTGTTGCCTCCCCCAGGAAAATTTGTAAGCTGCAGTCTCCCCAACTCGCCACGCTTTGAGTCGAGTTCTGCAAAGCATAAGAAGAAACACAAAAACCAGCCGTCGCCACTGACACGGCAGCA...

CDS

1 records

下载 CDS FASTA
LOC131026208
ATGAGTCCCTCGGCTGCAACTATGGGTATGATTCAAGAATCTCCTAAAAAAACAGCCTTGGAGAAGAAGGAAAGCATTGAGAAGGAGAGGCAGATTTCTGTTGATCCAATATCTATGCAGCCCAAAACGGAGGTGACACTGTTGCCTCCCCCAGGAAAATTTGTAAGCTGCAGTCTCCCCAACTCGCCACGCTTTGAGTCGAGTTCTGCAAAGCATAAGAAGAAACACAAAAACCAGCCGTCGCCACTGACACGGCAGCA...

Protein

1 records

下载 Protein FASTA
XP_057811970.1
MSPSAATMGMIQESPKKTALEKKESIEKERQISVDPISMQPKTEVTLLPPPGKFVSCSLPNSPRFESSSAKHKKKHKNQPSPLTRQQSVALGNLERLRMQRSKSCGEGRVCQPSIDLDLWPSSADNEAEEGKTRGGKGDGGGGEAKGKSKGEDKFKCGACLFLPGLGKGKAVRARKEVEEEHADIVSQRVSLEKFECGSWRSSAIINSQEDGDSTSNLFFDLPLELMRCASVNDAESPVTTGFLFDAANRKGVPKIGKSH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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