Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002582

染色体: Chr01 坐标: 43953659-43955993 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002582
名称SmilChr01G002582
描述uncharacterized SmilChr01G002582
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向43953659 - 43955993 / -

ID 对照

NCBI Gene IDLOC131026226
GeneID131026226
locus_tag-
NCBI NameLOC131026226
原始查询LOC131026226

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835267]; symbol=AT5G51920; hit=AT5G51920; species=arabidopsis; confidence=high
产物Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835267]; symbol=AT5G51920; hit=AT5G51920; species=arabidopsis; confidence=high
ArabidopsisAT5G51920 (AT5G51920)
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835267]
identity=45.6; qcov=0.993; evalue=2.32e-160; confidence=high
RiceOs08g0545000
-
identity=46; qcov=1.1; evalue=2.75e-160; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131026226

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.80000 XP_057811994.1
2 Cytoplasm 细胞质 0.60000 XP_057811994.1
3 Chromosome 染色体 0.00000 XP_057811994.1
4 Centromere 着丝粒 0.00000 XP_057811994.1
5 Chromatin 染色质 0.00000 XP_057811994.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:43953987 CT C 1bp_deletion frameshift_variant 1 B131
Chr1:43954017 C T EMS_canonical_SNV CDS_variant 1 C79
Chr1:43954162 G A EMS_canonical_SNV CDS_variant 1 C48
Chr1:43954246 C T EMS_canonical_SNV CDS_variant 4 B32,B52,B91,C40
Chr1:43954300 G A EMS_canonical_SNV CDS_variant 2 C11,C69
Chr1:43954543 G A EMS_canonical_SNV CDS_variant 3 B12,B138,B24
Chr1:43954702 G A EMS_canonical_SNV CDS_variant 5 B128,B52,C2,C34,C36
Chr1:43954714 C T EMS_canonical_SNV CDS_variant 1 C20
Chr1:43954840 C T EMS_canonical_SNV CDS_variant 5 A10,A24,B107,C5,C56
Chr1:43954978 C T EMS_canonical_SNV CDS_variant 4 B51,B58,B97,C3
Chr1:43955497 G A EMS_canonical_SNV CDS_variant 2 B101,B68
Chr1:43955518 G A EMS_canonical_SNV CDS_variant 3 B101,B68,D6

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057956011.1
ACACTGCAAAATAACAAAATCTCGTGTAAACGTCATCAATATATTGCAAAATGATGCAGAAACGTTGATAATAATGCGATTGTGATAGAAACCAATGAAATGGAATTACTAGTAAATTTTCCAAATCACTGTAAATCGACACATGGAAAAGCCAACAAAAATTGAGAATCAAAGAAAACAAAAGTAAAAGAAAATCCGAAATCAAACATAGTGATAGATGAAAGACTTGGTCAAGCACAGCTCTCATGAGACAACCTGGC...

CDS

1 records

下载 CDS FASTA
LOC131026226
ATGCAATCATCAAATTGCATTCGAGAGGCATCCAAAGCATGCTTCAACAGCTGCTGTGCCAATCCCCACAGTCCCGCCCCTCCGTCCGCCGCGGCCCCCCGCCGCGACTTCGTCTCCGCCATCCTCTCCACCCTCCACCCGAGCACGACTTTCACCAACCACGAGTCGCTCCCCTCGTCGAGGGAGCTGCTCTCCAGCCTCCGCGACGCCCTCCCCAACTACTTCAACTCCGTGCTCGCAGACAGCATCAGAGCTCAGGA...

Protein

1 records

下载 Protein FASTA
XP_057811994.1
MQSSNCIREASKACFNSCCANPHSPAPPSAAAPRRDFVSAILSTLHPSTTFTNHESLPSSRELLSSLRDALPNYFNSVLADSIRAQEYYHFNLSNHVCLDYVGHGLFSYAQKLLPASTSAPPPEERFFDFAYSSTNFTSYLLYGGEEQEFHAAAKRRIFRYMNVSEDDYSVVFTANQSSAFKLLAQSYPFGSQQNLVSLYDYDNEALQVMVEAAGKRGGRPQSAVFSWPTLRVNSRKLRKILMNKNRGLLAFPLQSRMSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器