Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002455`

染色体: Chr05 坐标: 27101248-27108916 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002455`
名称	SmilChr05G002455
描述	cleavage stimulating factor 64-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	27101248 - 27108916 / `+`

ID 对照

NCBI Gene ID	`LOC131026229`
GeneID	`131026229`
locus_tag	`-`
NCBI Name	`LOC131026229`
原始查询	`LOC131026229`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cleavage stimulating factor 64-like
产物	cleavage stimulating factor 64-like
Arabidopsis	`AT1G71800` (CSTF64) cleavage stimulating factor 64 [Source:NCBI gene (formerly Entrezgene);Acc:843510] identity=46.3; qcov=1.01; evalue=5.22e-118; confidence=high
Rice	`Os11g0176100` - identity=48; qcov=1.01; evalue=1.2e-122; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005847 (mRNA cleavage and polyadenylation specificity factor complex); GO:0031124 (mRNA 3'-end processing)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1); PF14304 (CSTF_C); PF14327 (CSTF2_hinge)
InterPro	-
eggNOG	-
NR	GeneID:131026229

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811995.1`
2	Nucleoplasm	核质	1.00000	`XP_057811996.1`
3	Chromosome	染色体	0.00000	`XP_057811995.1`
4	Centromere	着丝粒	0.00000	`XP_057811995.1`
5	Chromatin	染色质	0.00000	`XP_057811995.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:27101666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr5:27101935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,B131,C42
`Chr5:27105578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr5:27105766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:27106596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B28,B31,C42
`Chr5:27107216`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B64,B84,B94
`Chr5:27107396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B12,B131,B140,C42
`Chr5:27107829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:27107997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:27108100`	`CAT`	`C`	2bp_deletion	frameshift_variant	68	A15,A19,A21,A22,A24,A5,A8,A9,B1,B100,B101,B104,B107,B110,B114,B119,B123,B125,B126,B127,B128,B135,B136,B138,B15,B17,B18,B19,B2,B21,B24,B25,B35,B42,B43,B49,B50,B51,B52,B53,B54,B56,B57,B61,B70,B80,B81,B87,B88,B90,B92,B93,B96,C16,C3,C30,C38,C43,C44,C46,C48,C49,C55,C60,C7,C75,D1,D9
`Chr5:27108644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B110,B122,B35,C71,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811995.1

519 aa

260

519

RRM_1

CSTF2_hinge

PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa

XP_057811996.1

518 aa

259

518

RRM_1

CSTF2_hinge

CSTF_C

PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa PF14304 CSTF_C 485-516 aa

XP_057811997.1

517 aa

258

517

RRM_1

CSTF2_hinge

PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa

XP_057811998.1

516 aa

258

516

RRM_1

CSTF2_hinge

CSTF_C

PF00076 RRM_1 12-82 aa PF14327 CSTF2_hinge 155-231 aa PF14304 CSTF_C 483-514 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811995.1`	Pfam	`PF00076`	RRM_1	Domain	12	82	2.7e-23	82.3	RNA recognition motif
`XP_057811995.1`	Pfam	`PF14327`	CSTF2_hinge	Family	155	231	3.4e-13	50.5	Hinge domain of cleavage stimulation factor subunit 2
`XP_057811996.1`	Pfam	`PF00076`	RRM_1	Domain	12	82	2.5e-23	82.5	RNA recognition motif
`XP_057811996.1`	Pfam	`PF14327`	CSTF2_hinge	Family	155	231	1.4e-12	48.6	Hinge domain of cleavage stimulation factor subunit 2
`XP_057811996.1`	Pfam	`PF14304`	CSTF_C	Domain	485	516	2e-05	24.9	Transcription termination and cleavage factor C-terminal
`XP_057811997.1`	Pfam	`PF00076`	RRM_1	Domain	12	82	2.7e-23	82.3	RNA recognition motif
`XP_057811997.1`	Pfam	`PF14327`	CSTF2_hinge	Family	155	231	4.1e-13	50.3	Hinge domain of cleavage stimulation factor subunit 2
`XP_057811998.1`	Pfam	`PF00076`	RRM_1	Domain	12	82	2.4e-23	82.5	RNA recognition motif
`XP_057811998.1`	Pfam	`PF14327`	CSTF2_hinge	Family	155	231	1.7e-12	48.3	Hinge domain of cleavage stimulation factor subunit 2
`XP_057811998.1`	Pfam	`PF14304`	CSTF_C	Domain	483	514	2e-05	24.9	Transcription termination and cleavage factor C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057956014.1
ATGGAGTATTATTGACGAATCCAAACAAGAGTAGGAAAATCTATGGAGATTGGAGGGCGCCAACACTAACACAAACACCCTCTCGATCTCTCCATAAATCCCACCCTCTCCAAATTCCAATTTGTAAATAAATAAAACTGGTAACTAGAATCAAGATTTCATCCCATCTCAAATCCTCAATCTACTCTATTTGTTAATTTGATTTGAAATTTATTGTCGGCATCTAATACAATTAGAATAGTAGAAGAATACTTGTTTCA...

XM_057956012.1
GGAGTATTATTGACGAATCCAAACAAGAGTAGGAAAATCTATGGAGATTGGAGGGCGCCAACACTAACACAAACACCCTCTCGATCTCTCCATAAATCCCACCCTCTCCAAATTCCAATTTGTAAATAAATAAAACTGGTAACTAGAATCAAGATTTCATCCCATCTCAAATCCTCAATCTACTCTATTTGTTAATTTGATTTGAAATTTATTGTCGGCATCTAATACAATTAGAATAGTAGAAGAATACTTGTTTCAAA...

CDS

4 records

下载 CDS FASTA

LOC131026229
ATGGCCGCCAATGCGCAATCTCAGCATCGCTGCGTTTTTGTTGGGAACATACCGTATGATGCTACTGAAGAGCAACTCATTCAAATATGCGAGGAGGTTGGCCCGGTTGTTTCCTTCAGATTAGTTACGGATAGAGAAACTGGAAAACCAAAGGGTTATGGGTTCTGTGAGTACAAGGATGAAGAGACAGCTCTGAGTGCTCGCCGTAATCTTCAGGGTTATGAGATAAATGGTCGTCAGCTAAGAGTTGACTTCGCTGA...

Protein

4 records

下载 Protein FASTA

XP_057811995.1
MAANAQSQHRCVFVGNIPYDATEEQLIQICEEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPGVGSNVDAPKQFGGQAVLGHPSLHQPVGDSVATAAASVMAGALGSAQTASIPNQIGLQNSSLLGTDPLTRHLAKMSRSQLTEVLSEFKALATQNKEQAWKLLLSIPNLPKAIFQVEIMLGVVSPQMLQMPNIRQASSQPVQPLVQNSQTLSGLPPLP...

XP_057811996.1
MAANAQSQHRCVFVGNIPYDATEEQLIQICEEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPGVGSNVDAPKQFGGQAVLGHPSLHQPVGDSVATAAASVMAGALGSAQTASIPNQIGLQNSSLLGTDPLTRHLAKMSRSQLTEVLSEFKALATQNKEQAWKLLLSIPNLPKAIFQVEIMLGVVSPQMLQMPNIRQASSQPVQPLVQNSQTLSGLPPLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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