Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002525`

染色体: Chr01 坐标: 43224831-43231129 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002525`
名称	SmilChr01G002525
描述	protein TPX2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	43224831 - 43231129 / `+`

ID 对照

NCBI Gene ID	`LOC131026232`
GeneID	`131026232`
locus_tag	`-`
NCBI Name	`LOC131026232`
原始查询	`LOC131026232`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein TPX2-like
产物	protein TPX2-like
Arabidopsis	`AT4G22860` (AT4G22860) Cell cycle regulated microtubule associated protein [Source:NCBI gene (formerly Entrezgene);Acc:828385] identity=42.9; qcov=0.944; evalue=7.67e-92; confidence=medium
Rice	`Os06g0130200` - identity=33.3; qcov=0.926; evalue=4.01e-50; confidence=low
GO	GO:0005880 (nuclear microtubule); GO:0008017 (microtubule binding); GO:0030295 (protein kinase activator activity); GO:0032147 (activation of protein kinase activity); GO:0060236 (regulation of mitotic spindle organization); GO:0072686 (mitotic spindle); GO:0090307 (mitotic spindle assembly)
KEGG	-
Pfam	PF12214 (TPX2_importin)
InterPro	-
eggNOG	-
NR	GeneID:131026232

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057812005.1`
2	Spindle	Spindle	1.00000	`XP_057812005.1`
3	Nucleus	细胞核	0.80000	`XP_057812005.1`
4	Spindle pole	Spindle pole	0.60000	`XP_057812005.1`
5	Chromosome	染色体	0.40000	`XP_057812005.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:43229573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:43230510`	`C`	`CA`	1bp_insertion	frameshift_variant	10	B136,B30,B95,C21,C31,C40,C70,C73,C81,D6
`Chr1:43230748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812005.1

524 aa

N

1

262

524

TPX2_importin

C

PF12214 TPX2_importin 265-431 aa

XP_057812014.1

513 aa

N

1

256

513

TPX2_importin

C

PF12214 TPX2_importin 265-431 aa

XP_057812023.1

504 aa

N

1

252

504

TPX2_importin

C

PF12214 TPX2_importin 265-431 aa

XP_057812034.1

491 aa

N

1

246

491

TPX2_importin

C

PF12214 TPX2_importin 265-431 aa

XP_057812039.1

486 aa

N

1

243

486

TPX2_importin

C

PF12214 TPX2_importin 265-431 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812005.1`	Pfam	`PF12214`	TPX2_importin	Family	265	431	3.3e-37	128.5	Cell cycle regulated microtubule associated protein
`XP_057812014.1`	Pfam	`PF12214`	TPX2_importin	Family	265	431	3.1e-37	128.7	Cell cycle regulated microtubule associated protein
`XP_057812023.1`	Pfam	`PF12214`	TPX2_importin	Family	265	431	3.1e-37	128.6	Cell cycle regulated microtubule associated protein
`XP_057812034.1`	Pfam	`PF12214`	TPX2_importin	Family	265	431	3e-37	128.7	Cell cycle regulated microtubule associated protein
`XP_057812039.1`	Pfam	`PF12214`	TPX2_importin	Family	265	431	2.9e-37	128.7	Cell cycle regulated microtubule associated protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009102226.1
CATTCAAATTTACGGATCCTCTTCGCCTCGCCGCTCTCTCTCTCTCTCTCTCTCTGACTTCTGCCAAAACAAAATATACATACAAGCTCCTGTCTCTATCGTACGCACCACAAGTCCACATTTCAGTTCTCATTCTCTCTCGCATTCCAAGAATTCTCCGCTCTGCTTTTCTCTCTCTATCTCTATACAGAGGAACATCTGTATTGCGTCTACAGAGAGAAGCGGGGTTGAGGAAAATGGAAGAAGAAATGGTGGAACAT...

XM_057956022.1
CATTCAAATTTACGGATCCTCTTCGCCTCGCCGCTCTCTCTCTCTCTCTCTCTCTGACTTCTGCCAAAACAAAATATACATACAAGCTCCTGTCTCTATCGTACGCACCACAAGTCCACATTTCAGTTCTCATTCTCTCTCGCATTCCAAGAATTCTCCGCTCTGCTTTTCTCTCTCTATCTCTATACAGAGGAACATCTGTATTGCGTCTACAGAGAGAAGCGGGGTTGAGGAAAATGGAAGAAGAAATGGTGGAACAT...

CDS

5 records

下载 CDS FASTA

LOC131026232
ATGGAAGAAGAAATGGTGGAACATGCTGCGGATAAGGAGGAGGTCGAATACACTTTCACGGCGTATGAGATTGATCTGGACTACGAGTTCGACGCGGCTCGCTTCTTCGACTTCGAGCATGACGAGTCGCCTGTCCAGGCACGCCAAGCCGAGCTCTGGTTCGATTCCGCCGGAAGTTATCCGCCGTCTCCTTTCGTGGCAAATCTAGTTCCAAGAGAAGGGATATTGTTGGAAAACATTAATATCTCCCCCAAATCTAA...

LOC131026232
ATGGAAGAAGAAATGGTGGAACATGCTGCGGATAAGGAGGAGGTCGAATACACTTTCACGGCGTATGAGATTGATCTGGACTACGAGTTCGACGCGGCTCGCTTCTTCGACTTCGAGCATGACGAGTCGCCTGTCCAGGCACGCCAAGCCGAGCTCTGGTTCGATTCCGCCGGAAGTTATCCGCCGTCTCCTTTCGTGGCAAATCTAGTTCCAAGAGAAGGGATATTGTTGGAAAACATTAATATCTCCCCCAAATCTAA...

Protein

5 records

下载 Protein FASTA

XP_057812005.1
MEEEMVEHAADKEEVEYTFTAYEIDLDYEFDAARFFDFEHDESPVQARQAELWFDSAGSYPPSPFVANLVPREGILLENINISPKSKGVESMNLSESDSDVEAGHEIMAMNYADVEEGKDQGTSCTVHIDSQNQIQNRPQNLPSGLTFYNHMANTVKSETQSKLSMKPIYPRSSTLMKPTASQLAKQNRPFPAGPSRSNIRVFEKTSKSSATGCVIENQAAKRQKLEGGLLRKVAGAVQLQETNFVHKAPKRDGILDCPR...

XP_057812014.1
MEEEMVEHAADKEEVEYTFTAYEIDLDYEFDAARFFDFEHDESPVQARQAELWFDSAGSYPPSPFVANLVPREGILLENINISPKSKGVESMNLSESDSDVEAGHEIMAMNYADVEEGKDQGTSCTVHIDSQNQIQNRPQNLPSGLTFYNHMANTVKSETQSKLSMKPIYPRSSTLMKPTASQLAKQNRPFPAGPSRSNIRVFEKTSKSSATGCVIENQAAKRQKLEGGLLRKVAGAVQLQETNFVHKAPKRDGILDCPR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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