当前解析结果
SmilChr01G000689| 统一新 Gene ID | SmilChr01G000689 |
|---|---|
| 名称 | SmilChr01G000689 |
| 描述 | uncharacterized SmilChr01G000689 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 15420456 - 15425703 / + |
| NCBI Gene ID | LOC131026252 |
|---|---|
| GeneID | 131026252 |
| locus_tag | - |
| NCBI Name | LOC131026252 |
| 原始查询 | LOC131026252 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=42.3; qcov=0.081; evalue=2.6e-19; confidence=weak |
| Rice | Os04g0191000- identity=39; qcov=0.425; evalue=5.65e-97; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF00665 (rve); PF03732 (PEG10_N-capsid); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF24626 (SH3_Tf2-1); PF30901 (PEG10-RTL1_C-capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026252 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057812070.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057812070.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057812070.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057812070.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057812070.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:15420505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr1:15420509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C23,C27 |
Chr1:15420511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B7 |
Chr1:15420589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:15420593 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | A8 |
Chr1:15420593 |
TA |
T |
1bp_deletion | CDS_variant | 1 | A8 |
Chr1:15420612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,A7,B75,C4 |
Chr1:15420635 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B67,C13,C37 |
Chr1:15420635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B67,C13,C37 |
Chr1:15420654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B8,C65 |
Chr1:15420659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,C23,D3 |
Chr1:15420660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B127,B34,B41,C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812070.1PF03732
PEG10_N-capsid 2-58 aa
PF30901
PEG10-RTL1_C-capsid 68-141 aa
PF00098
zf-CCHC 198-215 aa
PF17919
RT_RNaseH_2 517-611 aa
PF17917
RT_RNaseH 542-641 aa
PF17921
Integrase_H2C2 678-735 aa
PF00665
rve 755-845 aa
PF24626
SH3_Tf2-1 924-985 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812070.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 2 | 58 | 7e-12 | 46.2 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057812070.1 |
Pfam | PF30901 |
PEG10-RTL1_C-capsid | Domain | 68 | 141 | 2.8e-08 | 34.3 | PEG10/RTL1, C-terminal capsid-like domain |
XP_057812070.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 198 | 215 | 0.00012 | 22.8 | Zinc knuckle |
XP_057812070.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 517 | 611 | 1.5e-31 | 109.1 | RNase H-like domain found in reverse transcriptase |
XP_057812070.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 542 | 641 | 3.2e-34 | 117.9 | RNase H-like domain found in reverse transcriptase |
XP_057812070.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 678 | 735 | 1.1e-17 | 64.6 | Integrase zinc binding domain |
XP_057812070.1 |
Pfam | PF00665 |
rve | Domain | 755 | 845 | 7.6e-09 | 36.5 | Integrase core domain |
XP_057812070.1 |
Pfam | PF24626 |
SH3_Tf2-1 | Domain | 924 | 985 | 5.8e-21 | 75.1 | Tf2-1-like, SH3 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。