Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002499`

染色体: Chr05 坐标: 27699018-27709090 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002499`
名称	SmilChr05G002499
描述	protein NAP1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	27699018 - 27709090 / `-`

ID 对照

NCBI Gene ID	`LOC131026269`
GeneID	`131026269`
locus_tag	`-`
NCBI Name	`LOC131026269`
原始查询	`LOC131026269`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NAP1
产物	protein NAP1
Arabidopsis	`AT2G35110` (GRL) transcription activator [Source:NCBI gene (formerly Entrezgene);Acc:818077] identity=76.1; qcov=1.02; evalue=0; confidence=high
Rice	`Os08g0544500` (LPL3) - identity=70; qcov=0.994; evalue=0; confidence=high
GO	GO:0000902 (cell morphogenesis); GO:0016477 (cell migration); GO:0030031 (cell projection assembly); GO:0030866 (cortical actin cytoskeleton organization); GO:0031209 (SCAR complex)
KEGG	smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF09735 (Nckap1)
InterPro	-
eggNOG	-
NR	GeneID:131026269

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057812053.1`
2	Nucleus	细胞核	0.40000	`XP_057812053.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057812053.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057812053.1`
5	P-body	P-body	0.20000	`XP_057812053.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:27699434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B132,C24
`Chr5:27699480`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B70
`Chr5:27699480`	`GC`	`G`	1bp_deletion	CDS_variant	1	B70
`Chr5:27699492`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B66
`Chr5:27699492`	`C`	`CT`	1bp_insertion	CDS_variant	1	B66
`Chr5:27699551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:27699886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr5:27700076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B4,B42,B43,B63,C54
`Chr5:27700187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B60,B7,C14,D4
`Chr5:27700237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B60,B7,C14
`Chr5:27700238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:27700358`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812053.1

1381 aa

690

1381

Nckap1

PF09735 Nckap1 72-1262 aa

XP_057812054.1

1381 aa

690

1381

Nckap1

PF09735 Nckap1 72-1262 aa

XP_057812055.1

1381 aa

690

1381

Nckap1

PF09735 Nckap1 72-1262 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812053.1`	Pfam	`PF09735`	Nckap1	Family	72	1262	2.6e-299	996.7	Nck-associated protein 1
`XP_057812054.1`	Pfam	`PF09735`	Nckap1	Family	72	1262	2.6e-299	996.7	Nck-associated protein 1
`XP_057812055.1`	Pfam	`PF09735`	Nckap1	Family	72	1262	2.6e-299	996.7	Nck-associated protein 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057956071.1
AAGGAAAATAAATTTGGCCCGATGGATCGTGCGGGGCTTGTTTTTTGGAGTTCTCCGGTACCTCTCTCTCTCTACAATCTGCTCCAGAGAGAGAAAGCCTTCCAGAAAAATAAATTAAAATAGGAAAAGAAGGGCATCCTCTCTCTCTATCTCTCTCATCGTCAACTTGGTTGTCTCGTATTGGAGCTTTAGTGTACTGAAGAAGAGTTGTTCTTGGTTGAGAAATCTGCTTGAGAGCAACAGGGATGGCAAAGTCCAGG...

XM_057956070.1
AAAATAAATTTGGCCCGATGGATCGTGCGGGGCTTGTTTTTTGGAGTTCTCCGGTACCTCTCTCTCTCTACAATCTGCTCCAGAGAGAGAAAGCCTTCCAGAAAAATAAATTAAAATAGGAAAAGAAGGGCATCCTCTCTCTCTATCTCTCTCATCGTCAACTTGGTTGTCTCGTATTGGAGCTTTAGTGTACTGTAAATTCCATACTCTACTCTATATATTTGAGTAATTTATGCTACTACCGGCATTTATAGCGTAGA...

CDS

3 records

下载 CDS FASTA

LOC131026269
ATGGCAAAGTCCAGGCCGCATTTCCCAGCTCAAGATGTATTATCATCTGCACAAGGATCAGTGAGGTCAAGAGAATGGGAGGGTCCAACTAGGTGGACTGAGTACTTAGGTCCTGACACAGCATCCAGGAGTAATGGTGGAGCCGAAGGAGTGGCTAGTCAAAACTCAAGTAGCTCATCACAGAAGGGTCTGAACATGCAATGGGTTTACCAGCTCACACATGTAGCTGAAGGGCTAATGGCTAAAATGTATAGACTTAA...

Protein

3 records

下载 Protein FASTA

XP_057812053.1
MAKSRPHFPAQDVLSSAQGSVRSREWEGPTRWTEYLGPDTASRSNGGAEGVASQNSSSSSQKGLNMQWVYQLTHVAEGLMAKMYRLNQILDYPDLVNHIYSETFWKAGLFPNHPKICILLEKKFPEHHSKLQLERVDKLALDAINDSAEVHLQSMEPWIQLLLDLMTFREQSLRLILDLSSTVITLLPHQNSLILHAFMDLFCSFVRVNLFSEKIPRKMMLQTYNLLYSMARNDRDCDFYHRLIQFVDSYDPPFKGLHED...

XP_057812054.1
MAKSRPHFPAQDVLSSAQGSVRSREWEGPTRWTEYLGPDTASRSNGGAEGVASQNSSSSSQKGLNMQWVYQLTHVAEGLMAKMYRLNQILDYPDLVNHIYSETFWKAGLFPNHPKICILLEKKFPEHHSKLQLERVDKLALDAINDSAEVHLQSMEPWIQLLLDLMTFREQSLRLILDLSSTVITLLPHQNSLILHAFMDLFCSFVRVNLFSEKIPRKMMLQTYNLLYSMARNDRDCDFYHRLIQFVDSYDPPFKGLHED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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