Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002571`

染色体: Chr01 坐标: 43795685-43800529 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002571`
名称	SmilChr01G002571
描述	sucrose-phosphatase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	43795685 - 43800529 / `-`

ID 对照

NCBI Gene ID	`LOC131026280`
GeneID	`131026280`
locus_tag	`-`
NCBI Name	`LOC131026280`
原始查询	`LOC131026280`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sucrose-phosphatase 1-like
产物	sucrose-phosphatase 1-like
Arabidopsis	`AT2G35840` (AT2G35840) Sucrose-6F-phosphate phosphohydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818157] identity=69.4; qcov=1; evalue=0; confidence=high
Rice	`Os01g0376700` - identity=65.4; qcov=0.972; evalue=0; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0005986 (sucrose biosynthetic process); GO:0050307 (sucrose-phosphate phosphatase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF05116 (S6PP); PF08282 (Hydrolase_3); PF08472 (S6PP_C)
InterPro	-
eggNOG	-
NR	GeneID:131026280

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057812076.1`
2	Cytoplasm	细胞质	0.80000	`XP_057812076.1`
3	Nucleus	细胞核	0.00000	`XP_057812076.1`
4	Chromosome	染色体	0.00000	`XP_057812076.1`
5	Centromere	着丝粒	0.00000	`XP_057812076.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:43797837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:43797863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,C61
`Chr1:43798100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:43798178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B3,C18
`Chr1:43798753`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:43798757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,C20,C61
`Chr1:43798930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:43799048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr1:43799069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812076.1

425 aa

212

425

S6PP

Hydrolase_3

S6PP_C

PF05116 S6PP 9-260 aa PF08282 Hydrolase_3 112-230 aa PF08472 S6PP_C 283-413 aa

XP_057812084.1

425 aa

212

425

S6PP

Hydrolase_3

S6PP_C

PF05116 S6PP 9-260 aa PF08282 Hydrolase_3 112-230 aa PF08472 S6PP_C 283-413 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812076.1`	Pfam	`PF05116`	S6PP	Family	9	260	6.8e-99	331.1	Sucrose-6F-phosphate phosphohydrolase
`XP_057812076.1`	Pfam	`PF08282`	Hydrolase_3	Domain	112	230	1e-11	45.8	haloacid dehalogenase-like hydrolase
`XP_057812076.1`	Pfam	`PF08472`	S6PP_C	Domain	283	413	1.7e-57	193.7	Sucrose-6-phosphate phosphohydrolase C-terminal
`XP_057812084.1`	Pfam	`PF05116`	S6PP	Family	9	260	6.8e-99	331.1	Sucrose-6F-phosphate phosphohydrolase
`XP_057812084.1`	Pfam	`PF08282`	Hydrolase_3	Domain	112	230	1e-11	45.8	haloacid dehalogenase-like hydrolase
`XP_057812084.1`	Pfam	`PF08472`	S6PP_C	Domain	283	413	1.7e-57	193.7	Sucrose-6-phosphate phosphohydrolase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956101.1
CAACTGCCAAACAAAAATTGAAATTGAAAGGCCCAGATCCAAATTAACGGTTCCATGCTACCATCTCTCACGTCACTCCTCTCTCTTCACCTTTCCTACGCACTCGCAGTCTCGCCACCTCCGCCACTGTATCAGACTTCAATTCCGCGAGTTTATCCGATGTATTCTCACATCCTCTGAATTCACACCGACGCCAAATCTGAGAGGATATATCACACTCGGCGATACATGTTGTAGATTCAGAAGATCTAAGAGTGAAC...

XM_057956093.1
TCTTCTCAGTCAATTAAAAAAGAAAAAGCAAATTCAGAAAAAAAGGCATTTATATTAGGTGGCCAATCTGCGGATATCTCTTTTGAAACTGTTTCAAATATATGATTATTGAAACACTATTTCCCTATTTGTGTTCCAACTTTTTTTGTTGCATAATTCAAACTCTTATTTTCTAATCTCTTTGTCTGTCCTAAAAAAACCCTTAGACTTCAATTCCGCGAGTTTATCCGATGTATTCTCACATCCTCTGAATTCACACC...

CDS

2 records

下载 CDS FASTA

LOC131026280
ATGGACCGACTAACTGAGAATGCACGCCTCATGATTGTCTCTGATCTTGATCATACAATGGTCGATCATCATGATCCCGAGAATCTCTCCCTGCTTAGATTCAATGCCTTGTGGGAAGCAAATTACCGTAGCAACTCTTTGCTAGTTTTCTCCACTGGGAGGTCTCCCACACTATACAAGCAATTGAGGAAAGAGAAGCCCATGCTAACCCCTGATATCACAATAATGTCTGTGGGAACTGAAATAACTTATGGTAACTC...

Protein

2 records

下载 Protein FASTA

XP_057812076.1
MDRLTENARLMIVSDLDHTMVDHHDPENLSLLRFNALWEANYRSNSLLVFSTGRSPTLYKQLRKEKPMLTPDITIMSVGTEITYGNSMEPDNGWVECLNQKWDRNIVFEETSKIAELTLQSETEQRPHKVSFYVQKDKAEDITRSLSTCLKEHGLDVKIIYSGGMDLDILPQGAGKGQALAYLHDKFKAEGKLPNNTLVCGDSGNDADLFTIPDVHGVMVSNAQEELLQWHAIYAKNNPKIIHAKERCAAGIIQAIGHFN...

XP_057812084.1
MDRLTENARLMIVSDLDHTMVDHHDPENLSLLRFNALWEANYRSNSLLVFSTGRSPTLYKQLRKEKPMLTPDITIMSVGTEITYGNSMEPDNGWVECLNQKWDRNIVFEETSKIAELTLQSETEQRPHKVSFYVQKDKAEDITRSLSTCLKEHGLDVKIIYSGGMDLDILPQGAGKGQALAYLHDKFKAEGKLPNNTLVCGDSGNDADLFTIPDVHGVMVSNAQEELLQWHAIYAKNNPKIIHAKERCAAGIIQAIGHFN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器