当前解析结果
SmilChr05G002507| 统一新 Gene ID | SmilChr05G002507 |
|---|---|
| 名称 | SmilChr05G002507 |
| 描述 | uncharacterized protein At4g19900 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 27811804 - 27815790 / + |
| NCBI Gene ID | LOC131026287 |
|---|---|
| GeneID | 131026287 |
| locus_tag | - |
| NCBI Name | LOC131026287 |
| 原始查询 | LOC131026287 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827735]; symbol=AT4G19900; hit=AT4G19900; species=arabidopsis; confidence=high |
| 产物 | alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827735]; symbol=AT4G19900; hit=AT4G19900; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G19900 (AT4G19900)alpha 1,4-glycosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827735] identity=54.2; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0567300 (OJ1092_A07.115)- identity=46.4; qcov=0.912; evalue=1.8e-168; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04488 (Gly_transf_sug); PF04572 (Gb3_synth) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026287 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057812083.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057812083.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057812083.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057812083.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057812083.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:27811957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr5:27812391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr5:27812479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr5:27812716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B110,B4 |
Chr5:27812863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C83,C9 |
Chr5:27813105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,B36 |
Chr5:27813433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B37,C11,C42,C69 |
Chr5:27814119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr5:27814497 |
GTT |
G |
2bp_deletion | frameshift_variant | 1 | A11 |
Chr5:27814497 |
GTT |
G |
2bp_deletion | CDS_variant | 1 | A11 |
Chr5:27815476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:27815507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B94,C8,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057812083.1PF04488
Gly_transf_sug 365-472 aa
PF04572
Gb3_synth 492-621 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812083.1 |
Pfam | PF04488 |
Gly_transf_sug | Family | 365 | 472 | 1.2e-18 | 68.3 | Glycosyltransferase sugar-binding region containing DXD motif |
XP_057812083.1 |
Pfam | PF04572 |
Gb3_synth | Family | 492 | 621 | 1.5e-21 | 77.6 | Alpha 1,4-glycosyltransferase conserved region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。