Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002544`

染色体: Chr05 坐标: 28419505-28428657 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002544`
名称	SmilChr05G002544
描述	bicyclogermacrene synthase-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	28419505 - 28428657 / `+`

ID 对照

NCBI Gene ID	`LOC131026294`
GeneID	`131026294`
locus_tag	`-`
NCBI Name	`LOC131026294`
原始查询	`LOC131026294`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bicyclogermacrene synthase-like
产物	bicyclogermacrene synthase-like
Arabidopsis	`AT5G23960` (TPS21) terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=36.1; qcov=1; evalue=6.7e-109; confidence=medium
Rice	`Os08g0139700` (OsTPS29) - identity=36.6; qcov=0.98; evalue=8.26e-105; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131026294

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057812102.1`
2	Cytoplasm	细胞质	0.60000	`XP_057812102.1`
3	Nucleus	细胞核	0.00000	`XP_057812102.1`
4	Chromosome	染色体	0.00000	`XP_057812102.1`
5	Centromere	着丝粒	0.00000	`XP_057812102.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:28419751`	`AGG`	`A`	2bp_deletion	frameshift_variant	4	A16,B98,C63,D3
`Chr5:28419751`	`AGG`	`A`	2bp_deletion	CDS_variant	4	A16,B98,C63,D3
`Chr5:28419826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,C9
`Chr5:28419845`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B18
`Chr5:28419845`	`A`	`AT`	1bp_insertion	CDS_variant	1	B18
`Chr5:28419915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B114,B33,B41,C75
`Chr5:28420048`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B36,D5
`Chr5:28420048`	`TC`	`T`	1bp_deletion	CDS_variant	2	B36,D5
`Chr5:28420068`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B84
`Chr5:28420068`	`TC`	`T`	1bp_deletion	CDS_variant	1	B84
`Chr5:28420160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr5:28420246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B115

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812102.1

544 aa

272

544

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 22-189 aa PF03936 Terpene_synth_C 247-486 aa PF19086 Terpene_syn_C_2 287-486 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812102.1`	Pfam	`PF01397`	Terpene_synth	Repeat	22	189	2.2e-40	139.1	Terpene synthase, N-terminal domain
`XP_057812102.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	247	486	7.4e-86	288.1	Terpene synthase family, metal binding domain
`XP_057812102.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	287	486	4.1e-49	167.8	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057956119.1
ATGGAGTCGAAAAATGAAAGCGTTGGGATGAGTCGGCCTCTTGAAAATTATCACCCAAATGTATGGGGAGACCGCTTCCTGGCCTACACCCCCGACCCATGCACGGGTGGTGAAAAAGATTTGGTTGAGAAGCTAAAGGAGGAAGTGAAAGGGGAGCTAAATGAAGCATCAAGGCTACTGAAGTTGGTGGATGCGATACAAAGATTAGGCATCGAGTATCATTTTGAGGAGGAGATCCACCCAGCTCTCTCCCATATTTT...

CDS

1 records

下载 CDS FASTA

LOC131026294
ATGGAGTCGAAAAATGAAAGCGTTGGGATGAGTCGGCCTCTTGAAAATTATCACCCAAATGTATGGGGAGACCGCTTCCTGGCCTACACCCCCGACCCATGCACGGGTGGTGAAAAAGATTTGGTTGAGAAGCTAAAGGAGGAAGTGAAAGGGGAGCTAAATGAAGCATCAAGGCTACTGAAGTTGGTGGATGCGATACAAAGATTAGGCATCGAGTATCATTTTGAGGAGGAGATCCACCCAGCTCTCTCCCATATTTT...

Protein

1 records

下载 Protein FASTA

XP_057812102.1
MESKNESVGMSRPLENYHPNVWGDRFLAYTPDPCTGGEKDLVEKLKEEVKGELNEASXRLLKLVDAIQRLGIEYHFEEEIHPALSHIFLHFCNDEHDYDLYTTALAFRLLRQDGYTISSRMLDKFKDAEEGGLKAPQDIMGILEYFEATHLRVKGEDILDDGYVSSRKLLESALPCLSNPIAEQVDHALHQHSNRRGLTRVEARHYISIYAQYASHHPKLLALAKLDFNLLQAMHKHELSDLSRWWKDLEVPTKLFYARD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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