Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002514`

染色体: Chr05 坐标: 27891862-27895220 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002514`
名称	SmilChr05G002514
描述	E3 ubiquitin-protein ligase RSL1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	27891862 - 27895220 / `-`

ID 对照

NCBI Gene ID	`LOC131026296`
GeneID	`131026296`
locus_tag	`-`
NCBI Name	`LOC131026296`
原始查询	`LOC131026296`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase RSL1
产物	E3 ubiquitin-protein ligase RSL1
Arabidopsis	`AT4G19670` (AT4G19670) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827711] identity=56.3; qcov=1.08; evalue=0; confidence=high
Rice	`Os12g0631200` - identity=51.9; qcov=1.02; evalue=9.18e-155; confidence=high
GO	GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF01485 (IBR); PF13456 (RVT_3)
InterPro	-
eggNOG	-
NR	GeneID:131026296

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057812104.1`
2	Cytoplasm	细胞质	0.80000	`XP_057812104.1`
3	Cytosol	细胞质基质	0.20000	`XP_057812104.1`
4	Chromosome	染色体	0.00000	`XP_057812104.1`
5	Centromere	着丝粒	0.00000	`XP_057812104.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:27892213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B13,D4
`Chr5:27892288`	`C`	`CTA`	2bp_insertion	frameshift_variant	2	C34,C73
`Chr5:27892288`	`C`	`CTA`	2bp_insertion	CDS_variant	2	C34,C73
`Chr5:27892289`	`ACG`	`A`	2bp_deletion	frameshift_variant	2	C34,C73
`Chr5:27892289`	`ACG`	`A`	2bp_deletion	CDS_variant	2	C34,C73
`Chr5:27892697`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	B138
`Chr5:27892697`	`TTG`	`T`	2bp_deletion	CDS_variant	1	B138
`Chr5:27892700`	`A`	`ATT`	2bp_insertion	frameshift_variant	1	B138
`Chr5:27892700`	`A`	`ATT`	2bp_insertion	CDS_variant	1	B138
`Chr5:27893074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B13,D4
`Chr5:27893184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr5:27893517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B110,B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812104.1

493 aa

246

493

RVT_3

zf-C3HC4

IBR

PF13456 RVT_3 74-187 aa PF00097 zf-C3HC4 206-250 aa PF01485 IBR 276-345 aa PF01485 IBR 364-414 aa

XP_057812105.1

493 aa

246

493

RVT_3

zf-C3HC4

IBR

PF13456 RVT_3 74-187 aa PF00097 zf-C3HC4 206-250 aa PF01485 IBR 276-345 aa PF01485 IBR 364-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812104.1`	Pfam	`PF13456`	RVT_3	Domain	74	187	1.3e-08	35.5	Reverse transcriptase-like
`XP_057812104.1`	Pfam	`PF00097`	zf-C3HC4	Domain	206	250	8.7e-05	23.0	Zinc finger, C3HC4 type (RING finger)
`XP_057812104.1`	Pfam	`PF01485`	IBR	Domain	276	345	8.7e-14	52.1	IBR domain, a half RING-finger domain
`XP_057812104.1`	Pfam	`PF01485`	IBR	Domain	364	414	8.7e-14	52.1	IBR domain, a half RING-finger domain
`XP_057812105.1`	Pfam	`PF13456`	RVT_3	Domain	74	187	1.3e-08	35.5	Reverse transcriptase-like
`XP_057812105.1`	Pfam	`PF00097`	zf-C3HC4	Domain	206	250	8.7e-05	23.0	Zinc finger, C3HC4 type (RING finger)
`XP_057812105.1`	Pfam	`PF01485`	IBR	Domain	276	345	8.7e-14	52.1	IBR domain, a half RING-finger domain
`XP_057812105.1`	Pfam	`PF01485`	IBR	Domain	364	414	8.7e-14	52.1	IBR domain, a half RING-finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956122.1
ATATATATATATATATATATTCATACTATATAATGATTAGGCGCTTTGTTTCTTTTTTCTTTTTTTTTAGTATTAGTTTATCTGCATCTTTATTCTAAAAAAAGAATTTATCTGCATCTTGCTTTCATTCTTTGTATATGTTAGGATTAGGAAGTAATCAAGGATTCACATTCCGATTCAATTCTACTGTGAACAATAATTAGTAAATCATGCACAGATGTAAAATATACGAAGAATTTGGCATAAAATACTCGCAGTAA...

XM_057956121.1
GGCGCTTTGTTTCTTTTTTCTTTTTTTTTAGTATTAGTTTATCTGCATCTTTATTCTAAAAAAAGAATTTATCTGCATCTTGCTTTCATTCTTTGTATATGTTAGGATTAGGAAGTAATCAAGGATTCACATTCCGATTCAATTCTACTGTGAACAATAATTAGTAAATCATGCACAGATGTAAAATATACGAAGAATTTGGCATAAAATACTCGCAGTAATTAATTATTTTAATTAAGAATTGTACAATGTATTCAACC...

CDS

2 records

下载 CDS FASTA

LOC131026296
ATGGCAATGGAGGAAAATAGAGTTCTTGCCAATAATGTAAACATGTGTGAGAGTGAAGCTTCAGATTTGAAGGTGGAAGAAGACGAAGATGACTTCAAGAGCTGTTGCGAAGACGAGGATGAATTGAAGGAGAAGGAAGAACACGTGAAGGTGAACTCAGATGAGAATGTAGTTAAAATGTATTTTAAGGGCGTGTCTATCACCTGCCCCGGTGATTCTGGTTCTAGTATTTCTGGAATTGGGGTGGTTATGGAGTGGCT...

Protein

2 records

下载 Protein FASTA

XP_057812104.1
MAMEENRVLANNVNMCESEASDLKVEEDEDDFKSCCEDEDELKEKEEHVKVNSDENVVKMYFKGVSITCPGDSGSSISGIGVVMEWLGCTTPVQVQKKLDFYVEELVAEYLALLDGFSEAIQHKPRHVVAFTDSEILHTQIVHDKVVESPLLVALRQRIVEQTSNFETFALKLVPTSDLHKALSLAQVAVGIVSTRGEGEESTESCSICFEEKLSSMMLSFKCSHKFCSHCMKTYVEGKVHSTQVPIRCPQLGCKYCISA...

XP_057812105.1
MAMEENRVLANNVNMCESEASDLKVEEDEDDFKSCCEDEDELKEKEEHVKVNSDENVVKMYFKGVSITCPGDSGSSISGIGVVMEWLGCTTPVQVQKKLDFYVEELVAEYLALLDGFSEAIQHKPRHVVAFTDSEILHTQIVHDKVVESPLLVALRQRIVEQTSNFETFALKLVPTSDLHKALSLAQVAVGIVSTRGEGEESTESCSICFEEKLSSMMLSFKCSHKFCSHCMKTYVEGKVHSTQVPIRCPQLGCKYCISA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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