Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002575`

染色体: Chr05 坐标: 28952925-28956360 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002575`
名称	SmilChr05G002575
描述	pentatricopeptide repeat-containing protein At4g21300
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	28952925 - 28956360 / `+`

ID 对照

NCBI Gene ID	`LOC131026332`
GeneID	`131026332`
locus_tag	`-`
NCBI Name	`LOC131026332`
原始查询	`LOC131026332`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At4g21300
产物	pentatricopeptide repeat-containing protein At4g21300
Arabidopsis	`AT4G21300` (AT4G21300) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827878] identity=48; qcov=0.958; evalue=0; confidence=high
Rice	`Os03g0781100` - identity=51.4; qcov=0.819; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131026332

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057812166.1`
2	Nucleus	细胞核	0.00000	`XP_057812166.1`
3	Chromosome	染色体	0.00000	`XP_057812166.1`
4	Centromere	着丝粒	0.00000	`XP_057812166.1`
5	Chromatin	染色质	0.00000	`XP_057812166.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:28953962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B18,B37,C67
`Chr5:28954613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:28954633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B18,B37,C67
`Chr5:28954718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr5:28954769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr5:28955194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr5:28955321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:28955508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B48,B7,C60
`Chr5:28955622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,D1,D11
`Chr5:28955638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:28955742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C48
`Chr5:28955785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B93,C34,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812166.1

839 aa

420

839

PPR

PPR_2

PPR_3

PPR_2

PPR

PPR_3

PPR

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR

E_motif

PF01535 PPR 112-139 aa PF13041 PPR_2 208-256 aa PF13812 PPR_3 209-257 aa PF13041 PPR_2 311-354 aa PF01535 PPR 313-337 aa PF01535 PPR 386-407 aa PF13812 PPR_3 411-458 aa PF01535 PPR 414-442 aa PF01535 PPR 515-541 aa PF13812 PPR_3 575-627 aa PF01535 PPR 588-614 aa PF13041 PPR_2 614-661 aa PF01535 PPR 616-645 aa PF13812 PPR_3 616-662 aa PF01535 PPR 651-678 aa PF01535 PPR 689-712 aa PF20431 E_motif 731-793 aa

XP_057812167.1

839 aa

420

839

PPR

PPR_2

PPR_3

PPR_2

PPR

PPR_3

PPR

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR

E_motif

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	112	139	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF13041`	PPR_2	Repeat	208	256	1.5e-68	227.5	PPR repeat family
`XP_057812166.1`	Pfam	`PF13812`	PPR_3	Repeat	209	257	3.2e-34	117.5	Pentatricopeptide repeat domain
`XP_057812166.1`	Pfam	`PF13041`	PPR_2	Repeat	311	354	1.5e-68	227.5	PPR repeat family
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	313	337	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	386	407	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF13812`	PPR_3	Repeat	411	458	3.2e-34	117.5	Pentatricopeptide repeat domain
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	414	442	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	515	541	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF13812`	PPR_3	Repeat	575	627	3.2e-34	117.5	Pentatricopeptide repeat domain
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	588	614	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF13041`	PPR_2	Repeat	614	661	1.5e-68	227.5	PPR repeat family
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	616	645	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF13812`	PPR_3	Repeat	616	662	3.2e-34	117.5	Pentatricopeptide repeat domain
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	651	678	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF01535`	PPR	Repeat	689	712	1.2e-53	176.4	PPR repeat
`XP_057812166.1`	Pfam	`PF20431`	E_motif	Repeat	731	793	2.3e-18	66.9	E motif
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	112	139	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF13041`	PPR_2	Repeat	208	256	1.5e-68	227.5	PPR repeat family
`XP_057812167.1`	Pfam	`PF13812`	PPR_3	Repeat	209	257	3.2e-34	117.5	Pentatricopeptide repeat domain
`XP_057812167.1`	Pfam	`PF13041`	PPR_2	Repeat	311	354	1.5e-68	227.5	PPR repeat family
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	313	337	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	386	407	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF13812`	PPR_3	Repeat	411	458	3.2e-34	117.5	Pentatricopeptide repeat domain
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	414	442	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	515	541	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF13812`	PPR_3	Repeat	575	627	3.2e-34	117.5	Pentatricopeptide repeat domain
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	588	614	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF13041`	PPR_2	Repeat	614	661	1.5e-68	227.5	PPR repeat family
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	616	645	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF13812`	PPR_3	Repeat	616	662	3.2e-34	117.5	Pentatricopeptide repeat domain
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	651	678	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF01535`	PPR	Repeat	689	712	1.2e-53	176.4	PPR repeat
`XP_057812167.1`	Pfam	`PF20431`	E_motif	Repeat	731	793	2.3e-18	66.9	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956184.1
CTGGGCCGAAATCTATTCTGATTTCCGAACTTGAACTACCCAATACCTGCCGCTTTCCCTTTTTCTCTAGAGAACAGCGCAGCGACAGTCTTCATCGGTTCCTTCCTCCCCCTGCCCCACACAGCAGCGCCGGCGCGGCTGCTTCCCCTCCGTCCTCGACAGCTCCTGCTTCACAGGCGCAGCCACACAAAACGCACCGCCTCCTCTCTCCCTTCTTCCCCTTCGCCGCCAGCGGCATCGCCCGCCGACTGCGCTGCGCC...

XM_057956183.1
CTGGGCCGAAATCTATTCTGATTTCCGAACTTGAACTACCCAATACCTGCCGCTTTCCCTTTTTCTCTAGAGAACAGCGCAGCGACAGTCTTCATCGGTTCCTTCCTCCCCCTGCCCCACACAGCAGCGCCGGCGCGGCTGCTTCCCCTCCGTCCTCGACAGCTCCTGCTTCACAGGCGCAGCCACACAAAACGCACCGCCTCCTCTCTCCCTTCTTCCCCTTCGCCGCCAGCGGCATCGCCCGCCGACTGCGCTGCGCC...

CDS

2 records

下载 CDS FASTA

LOC131026332
ATGCGATTAACGCATCATTGTCGAATAGGATTTTCATCAATCTTATCGCAAGATTCATGGTCTCATAGCCGGTTTCTCTATTCAGCCAAACAATCGTATGATTTTCATTATACGGAGGAGGTCTTGGCGTCCCATATCGCGCCGCTTCTAGAACATAAGAATTCCTCTCATTCTCTTCAACTAACGCAGCAAATACACGCCCAATTTACAGTTAATGGGCTCCTCAACAAGGGTATTCTGGGGACGAGGATTCTGGGCGT...

Protein

2 records

下载 Protein FASTA

XP_057812166.1
MRLTHHCRIGFSSILSQDSWSHSRFLYSAKQSYDFHYTEEVLASHIAPLLEHKNSSHSLQLTQQIHAQFTVNGLLNKGILGTRILGVYITCNNYFDAKKLFWQLNLRYASPWNWMIRGFTQMGRYDYGVLFYFKMLSYGTNPDKYTFPYLIKACGGLRAVDLVKYVHGMIKDLGFELDVYVGSALVNFYTENDCLDNARNVFDKLPQRDVVLWNGMLNGYLKFEGLEGNLIGLFEQMRKGEVEPNAVTYTCILKLCGLKS...

XP_057812167.1
MRLTHHCRIGFSSILSQDSWSHSRFLYSAKQSYDFHYTEEVLASHIAPLLEHKNSSHSLQLTQQIHAQFTVNGLLNKGILGTRILGVYITCNNYFDAKKLFWQLNLRYASPWNWMIRGFTQMGRYDYGVLFYFKMLSYGTNPDKYTFPYLIKACGGLRAVDLVKYVHGMIKDLGFELDVYVGSALVNFYTENDCLDNARNVFDKLPQRDVVLWNGMLNGYLKFEGLEGNLIGLFEQMRKGEVEPNAVTYTCILKLCGLKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器