当前解析结果
SmilChr05G002579| 统一新 Gene ID | SmilChr05G002579 |
|---|---|
| 名称 | SmilChr05G002579 |
| 描述 | pentatricopeptide repeat-containing protein At1g30610, chloroplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 29013353 - 29019046 / + |
| NCBI Gene ID | LOC131026334 |
|---|---|
| GeneID | 131026334 |
| locus_tag | - |
| NCBI Name | LOC131026334 |
| 原始查询 | LOC131026334 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g30610, chloroplastic |
| 产物 | pentatricopeptide repeat-containing protein At1g30610%2C chloroplastic |
| Arabidopsis | AT1G30610 (EMB2279)pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839941] identity=59.7; qcov=0.748; evalue=0; confidence=high |
| Rice | Os01g0674700- identity=56.4; qcov=0.743; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026334 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057812169.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057812169.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057812169.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057812169.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057812169.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:29013657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B101,B13 |
Chr5:29013668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B99 |
Chr5:29013697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B99 |
Chr5:29013760 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr5:29013769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:29014100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B53,B84,C33,C38,C78 |
Chr5:29015158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B136,C33 |
Chr5:29015205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B25,D9 |
Chr5:29015222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:29017036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B18,B37,C67 |
Chr5:29017952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr5:29018131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812169.1PF01535
PPR 281-305 aa
PF13812
PPR_3 360-409 aa
PF01535
PPR 366-390 aa
PF01535
PPR 435-464 aa
PF13812
PPR_3 501-547 aa
PF01535
PPR 504-531 aa
PF01535
PPR 538-567 aa
PF01535
PPR 585-614 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812169.1 |
Pfam | PF01535 |
PPR | Repeat | 281 | 305 | 6.7e-33 | 111.3 | PPR repeat |
XP_057812169.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 360 | 409 | 7.7e-20 | 71.5 | Pentatricopeptide repeat domain |
XP_057812169.1 |
Pfam | PF01535 |
PPR | Repeat | 366 | 390 | 6.7e-33 | 111.3 | PPR repeat |
XP_057812169.1 |
Pfam | PF01535 |
PPR | Repeat | 435 | 464 | 6.7e-33 | 111.3 | PPR repeat |
XP_057812169.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 501 | 547 | 7.7e-20 | 71.5 | Pentatricopeptide repeat domain |
XP_057812169.1 |
Pfam | PF01535 |
PPR | Repeat | 504 | 531 | 6.7e-33 | 111.3 | PPR repeat |
XP_057812169.1 |
Pfam | PF01535 |
PPR | Repeat | 538 | 567 | 6.7e-33 | 111.3 | PPR repeat |
XP_057812169.1 |
Pfam | PF01535 |
PPR | Repeat | 585 | 614 | 6.7e-33 | 111.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。