Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002580`

染色体: Chr05 坐标: 29033292-29037444 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002580`
名称	SmilChr05G002580
描述	UDP-arabinose 4-epimerase 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	29033292 - 29037444 / `+`

ID 对照

NCBI Gene ID	`LOC131026336`
GeneID	`131026336`
locus_tag	`-`
NCBI Name	`LOC131026336`
原始查询	`LOC131026336`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-arabinose 4-epimerase 1
产物	UDP-arabinose 4-epimerase 1
Arabidopsis	`AT1G30620` (MUR4) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839942] identity=85.8; qcov=0.983; evalue=0; confidence=high
Rice	`Os07g0139400` (UEL-1) - identity=79; qcov=1; evalue=0; confidence=high
GO	GO:0003978 (UDP-glucose 4-epimerase activity); GO:0005829 (cytosol); GO:0033499 (beta-D-galactose catabolic process via UDP-galactose, Leloir pathway)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131026336

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057812170.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057812170.1`
3	Nucleus	细胞核	0.00000	`XP_057812170.1`
4	Chromosome	染色体	0.00000	`XP_057812170.1`
5	Centromere	着丝粒	0.00000	`XP_057812170.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:29034356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,C75
`Chr5:29034788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,B9
`Chr5:29035018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,D1
`Chr5:29036550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:29036929`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:29037103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,C85
`Chr5:29037124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812170.1

417 aa

208

417

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

NAD_binding_10

PF04321 RmlD_sub_bind 72-252 aa PF02719 Polysacc_synt_2 73-253 aa PF01370 Epimerase 73-334 aa PF01073 3Beta_HSD 74-235 aa PF16363 GDP_Man_Dehyd 74-389 aa PF07993 NAD_binding_4 76-257 aa PF13460 NAD_binding_10 77-250 aa

XP_057812171.1

417 aa

208

417

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

NAD_binding_10

XP_057812172.1

417 aa

208

417

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

NAD_binding_10

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812170.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	72	252	1.3e-10	41.6	RmlD substrate binding domain
`XP_057812170.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	73	253	1.2e-13	51.7	Polysaccharide biosynthesis protein
`XP_057812170.1`	Pfam	`PF01370`	Epimerase	Family	73	334	3.7e-53	181.1	NAD dependent epimerase/dehydratase family
`XP_057812170.1`	Pfam	`PF01073`	3Beta_HSD	Family	74	235	1.7e-13	51.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057812170.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	74	389	1.1e-54	186.9	GDP-mannose 4,6 dehydratase
`XP_057812170.1`	Pfam	`PF07993`	NAD_binding_4	Family	76	257	4.2e-07	30.1	Male sterility protein
`XP_057812170.1`	Pfam	`PF13460`	NAD_binding_10	Domain	77	250	2.5e-08	34.7	NAD(P)H-binding
`XP_057812171.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	72	252	1.3e-10	41.6	RmlD substrate binding domain
`XP_057812171.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	73	253	1.2e-13	51.7	Polysaccharide biosynthesis protein
`XP_057812171.1`	Pfam	`PF01370`	Epimerase	Family	73	334	3.7e-53	181.1	NAD dependent epimerase/dehydratase family
`XP_057812171.1`	Pfam	`PF01073`	3Beta_HSD	Family	74	235	1.7e-13	51.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057812171.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	74	389	1.1e-54	186.9	GDP-mannose 4,6 dehydratase
`XP_057812171.1`	Pfam	`PF07993`	NAD_binding_4	Family	76	257	4.2e-07	30.1	Male sterility protein
`XP_057812171.1`	Pfam	`PF13460`	NAD_binding_10	Domain	77	250	2.5e-08	34.7	NAD(P)H-binding
`XP_057812172.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	72	252	1.3e-10	41.6	RmlD substrate binding domain
`XP_057812172.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	73	253	1.2e-13	51.7	Polysaccharide biosynthesis protein
`XP_057812172.1`	Pfam	`PF01370`	Epimerase	Family	73	334	3.7e-53	181.1	NAD dependent epimerase/dehydratase family
`XP_057812172.1`	Pfam	`PF01073`	3Beta_HSD	Family	74	235	1.7e-13	51.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057812172.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	74	389	1.1e-54	186.9	GDP-mannose 4,6 dehydratase
`XP_057812172.1`	Pfam	`PF07993`	NAD_binding_4	Family	76	257	4.2e-07	30.1	Male sterility protein
`XP_057812172.1`	Pfam	`PF13460`	NAD_binding_10	Domain	77	250	2.5e-08	34.7	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057956187.1
ATTTTTTGTGCTTCTGTTTCCTATTTGCAGCAAATTCAAAAGCGTACACGCTCAGACCCAAGCAGGAACACCGCCACCTGCTCTCTCTCTCTACTTTCGTTTTTTAAGAAAAAGAAAATTTCGGGTTTCTTCGCAATCCCTGTTCGTGTCGAGGGACATCCGAGGATACGGGTGTATTGGTTGGTGATTGATGTGAATATCTGAATAGAACCATTTATTTTATACGAATAAAAGAAGAGATTTCTCAATGCTGAGTTTTA...

XM_057956188.1
TCTCTACTTTCGTTTTTTAAGAAAAAGAAAATTTCGGGTTTCTTCGCAATCCCTGTTCGTGTCGAGGGTATAAGCCAAAATTTGATCTTGTTTACGATTTCTTGAGGGTTTCTAATTTCTCGTGATTGAATGCATATGAGTCACCGCTGTTTGTCCCTTTTGTTATATGGGAGGCCTTCTATTTTCTGTTCATCGATTTTATTGATTTTTCAGATCTTGTGATCACTCAGATACATGCATACATGTCCCGAGAGATTTGT...

CDS

3 records

下载 CDS FASTA

LOC131026336
ATGCTGAGTTTTAATAGGATCAGAGCTCAGCCGAGGTCCAATAGATCTATGTCTTTAGGAGGCATGGATTATGCGGATCCGAAGAAGAAGAACAATTTTTGTGGAAAAATCTTAATGGTTTCCACTCTTACAGCATTGTGCATTCTTATGCTCAAGCATTCCCCAAATTTCAACACCCCAAGCCAATTCTCCAGTCATGAACCCGGTGTGACTCATGTATTGGTAACTGGAGGTGCTGGATACATCGGTTCACATGCTGC...

Protein

3 records

下载 Protein FASTA

XP_057812170.1
MLSFNRIRAQPRSNRSMSLGGMDYADPKKKNNFCGKILMVSTLTALCILMLKHSPNFNTPSQFSSHEPGVTHVLVTGGAGYIGSHAALRLLKDFYRVTIVDNLSRGNLGAIHVLQQLFPEPGRLQFIYADLGDAKSVRKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAMAAHGVKTFIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDIILDFHKNSDMAVMILRYFNVIGSDPEGRLG...

XP_057812171.1
MLSFNRIRAQPRSNRSMSLGGMDYADPKKKNNFCGKILMVSTLTALCILMLKHSPNFNTPSQFSSHEPGVTHVLVTGGAGYIGSHAALRLLKDFYRVTIVDNLSRGNLGAIHVLQQLFPEPGRLQFIYADLGDAKSVRKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAMAAHGVKTFIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDIILDFHKNSDMAVMILRYFNVIGSDPEGRLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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