Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002602`

染色体: Chr05 坐标: 29228214-29234252 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002602`
名称	SmilChr05G002602
描述	lysine-specific demethylase JMJ18-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	29228214 - 29234252 / `+`

ID 对照

NCBI Gene ID	`LOC131026355`
GeneID	`131026355`
locus_tag	`-`
NCBI Name	`LOC131026355`
原始查询	`LOC131026355`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lysine-specific demethylase JMJ18-like
产物	lysine-specific demethylase JMJ18-like
Arabidopsis	`AT1G30810` (JMJ18) Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:839963] identity=58.6; qcov=0.925; evalue=0; confidence=high
Rice	`Os05g0302300` (JMJ704) - identity=62.1; qcov=0.643; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0034647 (histone H3K4me/H3K4me2/H3K4me3 demethylase activity)
KEGG	-
Pfam	PF02373 (JmjC); PF02375 (JmjN); PF02928 (zf-C5HC2); PF05964 (FYRN); PF05965 (FYRC)
InterPro	-
eggNOG	-
NR	GeneID:131026355

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057812200.1`
2	Chromosome	染色体	0.00000	`XP_057812200.1`
3	Centromere	着丝粒	0.00000	`XP_057812200.1`
4	Chromatin	染色质	0.00000	`XP_057812200.1`
5	Telomere	端粒	0.00000	`XP_057812200.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:29229865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B49,C47,C6,C8
`Chr5:29230154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr5:29230983`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B30
`Chr5:29230983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr5:29230989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,B39
`Chr5:29231787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr5:29231994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,B13
`Chr5:29232459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:29232674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B49,C47,C6,C8
`Chr5:29233832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B16,B6,C39,C56,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812200.1

871 aa

436

871

JmjN

JmjC

zf-C5HC2

FYRN

FYRC

PF02375 JmjN 47-80 aa PF02373 JmjC 286-402 aa PF02928 zf-C5HC2 509-561 aa PF05964 FYRN 634-684 aa PF05965 FYRC 688-774 aa

XP_057812201.1

871 aa

436

871

JmjN

JmjC

zf-C5HC2

FYRN

FYRC

PF02375 JmjN 47-80 aa PF02373 JmjC 286-402 aa PF02928 zf-C5HC2 509-561 aa PF05964 FYRN 634-684 aa PF05965 FYRC 688-774 aa

XP_057812202.1

871 aa

436

871

JmjN

JmjC

zf-C5HC2

FYRN

FYRC

PF02375 JmjN 47-80 aa PF02373 JmjC 286-402 aa PF02928 zf-C5HC2 509-561 aa PF05964 FYRN 634-684 aa PF05965 FYRC 688-774 aa

XP_057812203.1

871 aa

436

871

JmjN

JmjC

zf-C5HC2

FYRN

FYRC

PF02375 JmjN 47-80 aa PF02373 JmjC 286-402 aa PF02928 zf-C5HC2 509-561 aa PF05964 FYRN 634-684 aa PF05965 FYRC 688-774 aa

XP_057812204.1

871 aa

436

871

JmjN

JmjC

zf-C5HC2

FYRN

FYRC

PF02375 JmjN 47-80 aa PF02373 JmjC 286-402 aa PF02928 zf-C5HC2 509-561 aa PF05964 FYRN 634-684 aa PF05965 FYRC 688-774 aa

XP_057812205.1

871 aa

436

871

JmjN

JmjC

zf-C5HC2

FYRN

FYRC

PF02375 JmjN 47-80 aa PF02373 JmjC 286-402 aa PF02928 zf-C5HC2 509-561 aa PF05964 FYRN 634-684 aa PF05965 FYRC 688-774 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812200.1`	Pfam	`PF02375`	JmjN	Family	47	80	8.3e-17	61.4	jmjN domain
`XP_057812200.1`	Pfam	`PF02373`	JmjC	Domain	286	402	1.9e-46	157.9	JmjC domain, hydroxylase
`XP_057812200.1`	Pfam	`PF02928`	zf-C5HC2	Domain	509	561	6.2e-13	49.6	C5HC2 zinc finger
`XP_057812200.1`	Pfam	`PF05964`	FYRN	Family	634	684	2.9e-11	43.5	F/Y-rich N-terminus
`XP_057812200.1`	Pfam	`PF05965`	FYRC	Family	688	774	5.4e-21	75.3	F/Y rich C-terminus
`XP_057812201.1`	Pfam	`PF02375`	JmjN	Family	47	80	8.3e-17	61.4	jmjN domain
`XP_057812201.1`	Pfam	`PF02373`	JmjC	Domain	286	402	1.9e-46	157.9	JmjC domain, hydroxylase
`XP_057812201.1`	Pfam	`PF02928`	zf-C5HC2	Domain	509	561	6.2e-13	49.6	C5HC2 zinc finger
`XP_057812201.1`	Pfam	`PF05964`	FYRN	Family	634	684	2.9e-11	43.5	F/Y-rich N-terminus
`XP_057812201.1`	Pfam	`PF05965`	FYRC	Family	688	774	5.4e-21	75.3	F/Y rich C-terminus
`XP_057812202.1`	Pfam	`PF02375`	JmjN	Family	47	80	8.3e-17	61.4	jmjN domain
`XP_057812202.1`	Pfam	`PF02373`	JmjC	Domain	286	402	1.9e-46	157.9	JmjC domain, hydroxylase
`XP_057812202.1`	Pfam	`PF02928`	zf-C5HC2	Domain	509	561	6.2e-13	49.6	C5HC2 zinc finger
`XP_057812202.1`	Pfam	`PF05964`	FYRN	Family	634	684	2.9e-11	43.5	F/Y-rich N-terminus
`XP_057812202.1`	Pfam	`PF05965`	FYRC	Family	688	774	5.4e-21	75.3	F/Y rich C-terminus
`XP_057812203.1`	Pfam	`PF02375`	JmjN	Family	47	80	8.3e-17	61.4	jmjN domain
`XP_057812203.1`	Pfam	`PF02373`	JmjC	Domain	286	402	1.9e-46	157.9	JmjC domain, hydroxylase
`XP_057812203.1`	Pfam	`PF02928`	zf-C5HC2	Domain	509	561	6.2e-13	49.6	C5HC2 zinc finger
`XP_057812203.1`	Pfam	`PF05964`	FYRN	Family	634	684	2.9e-11	43.5	F/Y-rich N-terminus
`XP_057812203.1`	Pfam	`PF05965`	FYRC	Family	688	774	5.4e-21	75.3	F/Y rich C-terminus
`XP_057812204.1`	Pfam	`PF02375`	JmjN	Family	47	80	8.3e-17	61.4	jmjN domain
`XP_057812204.1`	Pfam	`PF02373`	JmjC	Domain	286	402	1.9e-46	157.9	JmjC domain, hydroxylase
`XP_057812204.1`	Pfam	`PF02928`	zf-C5HC2	Domain	509	561	6.2e-13	49.6	C5HC2 zinc finger
`XP_057812204.1`	Pfam	`PF05964`	FYRN	Family	634	684	2.9e-11	43.5	F/Y-rich N-terminus
`XP_057812204.1`	Pfam	`PF05965`	FYRC	Family	688	774	5.4e-21	75.3	F/Y rich C-terminus
`XP_057812205.1`	Pfam	`PF02375`	JmjN	Family	47	80	8.3e-17	61.4	jmjN domain
`XP_057812205.1`	Pfam	`PF02373`	JmjC	Domain	286	402	1.9e-46	157.9	JmjC domain, hydroxylase
`XP_057812205.1`	Pfam	`PF02928`	zf-C5HC2	Domain	509	561	6.2e-13	49.6	C5HC2 zinc finger
`XP_057812205.1`	Pfam	`PF05964`	FYRN	Family	634	684	2.9e-11	43.5	F/Y-rich N-terminus
`XP_057812205.1`	Pfam	`PF05965`	FYRC	Family	688	774	5.4e-21	75.3	F/Y rich C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057956218.1
AAACTTTATTTATTTTATTTATTCTTTTGGAAAAGCAAATTTGAGAGGGGTCGTTGGGGGGTAGTACCCGGGTTTTTCTCTTGCAGATCCAACTTCCTCGTATTACAACTCTTATCCTACACAAAACCAGTCTCTATTTCCATTAAACTTATCCTTTTATTTTATTTTTTTTATAAAGCTTAGATTTTTACATTTTGGGGTTGAATTATACTCCAATAATAATTAAGAAAAGTACATAGTAATAACAGTATAAAAACAAG...

XM_057956219.1
TGTCAGCATTATAGAACTGAATATTTATTTTTCATGAAAACAAAAAAAATTCCTTTTTGGTTTATATTTTACCGTCAAGATATGGGGAGCCAATTTTCTCTTTCGATATCTAGATTAATAGTATAAGGATTTCTGCCGACTGAGAACTGCGGCTGTGAGACTTTGCTTTTGGAAGGGTCAACAATCGATCCGCAATTAATCAGCCGCAGATATATGCTGCACTTTATAATCCAATAGTCATGAGACTGAAGGATCATCCT...

CDS

6 records

下载 CDS FASTA

LOC131026355
ATGAGACTGAAGGATCATCCTTCCAGAAATGCCCAGAAAAACAATGAGAGCCACGATTCTCCTGGCAGTCCGCGGCACAGAAAGGTGTTGGCAAGATGGGATCCTGATGAAGCCTGCAGGCCCGTTATTGATGATGCTCCAATCTTTTATCCAACCGAGGAGGAGTTCCAAGATACTGTTGGTTATATAGAAAGCATTCGTCCCAGAGCTGAGGCTTATGGTATTTGTAAAATTGTACCGCCTCCATCTTGGAAGCCGCC...

Protein

6 records

下载 Protein FASTA

XP_057812200.1
MRLKDHPSRNAQKNNESHDSPGSPRHRKVLARWDPDEACRPVIDDAPIFYPTEEEFQDTVGYIESIRPRAEAYGICKIVPPPSWKPPCPLKEKEVWERSKFSTRIQQVDLLQNREPMRKKSQKKRKRRRQFNSRPRRRARSESSEANTAGESEEKFGFQSGSDFTLEEFKRYAEVFKETYFRVKERTQESSAEIGQDKRWLPTVNDIEGEYWRIIEQPTDEVEVYYGADLETGMLGSGFPKDSSLLTDSKISRYVNSGWN...

XP_057812201.1
MRLKDHPSRNAQKNNESHDSPGSPRHRKVLARWDPDEACRPVIDDAPIFYPTEEEFQDTVGYIESIRPRAEAYGICKIVPPPSWKPPCPLKEKEVWERSKFSTRIQQVDLLQNREPMRKKSQKKRKRRRQFNSRPRRRARSESSEANTAGESEEKFGFQSGSDFTLEEFKRYAEVFKETYFRVKERTQESSAEIGQDKRWLPTVNDIEGEYWRIIEQPTDEVEVYYGADLETGMLGSGFPKDSSLLTDSKISRYVNSGWN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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