当前解析结果
SmilChr05G002624| 统一新 Gene ID | SmilChr05G002624 |
|---|---|
| 名称 | SmilChr05G002624 |
| 描述 | primase homolog protein-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 29585647 - 29590303 / + |
| NCBI Gene ID | LOC131026389 |
|---|---|
| GeneID | 131026389 |
| locus_tag | - |
| NCBI Name | LOC131026389 |
| 原始查询 | LOC131026389 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | primase homolog protein-like |
| 产物 | primase homolog protein-like |
| Arabidopsis | AT1G30680 (AT1G30680)toprim domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839948] identity=50; qcov=0.904; evalue=8.36e-109; confidence=high |
| Rice | -- |
| GO | GO:0003697 (single-stranded DNA binding); GO:0043139 (5'-3' DNA helicase activity) |
| KEGG | - |
| Pfam | PF01751 (Toprim); PF13155 (Toprim_2); PF13662 (Toprim_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026389 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057812241.1 |
| 2 | Mitochondrion | 线粒体 | 0.60000 | XP_057812241.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057812242.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057812241.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812241.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:29585824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr5:29585929 |
A |
AT |
1bp_insertion | frameshift_variant | 23 | A16,A18,A4,B125,B16,B18,B49,B6,B60,B63,B8,B82,B85,B86,B91,B95,C10,C14,C18,C37,C47,C63,D5 |
Chr5:29585968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C13,C77 |
Chr5:29585992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:29586979 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B22 |
Chr5:29586979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:29587758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B13 |
Chr5:29589363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr5:29589693 |
G |
GGT |
2bp_insertion | frameshift_variant | 1 | B134 |
Chr5:29589693 |
G |
GGT |
2bp_insertion | CDS_variant | 1 | B134 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812241.1PF13662
Toprim_4 277-365 aa
PF01751
Toprim 278-359 aa
PF13155
Toprim_2 280-386 aa
XP_057812242.1PF01751
Toprim 260-337 aa
PF13662
Toprim_4 260-343 aa
PF13155
Toprim_2 260-364 aa
XP_057812243.1PF13662
Toprim_4 249-337 aa
PF01751
Toprim 250-331 aa
PF13155
Toprim_2 252-358 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812241.1 |
Pfam | PF13662 |
Toprim_4 | Domain | 277 | 365 | 4.1e-16 | 59.7 | Toprim domain |
XP_057812241.1 |
Pfam | PF01751 |
Toprim | Family | 278 | 359 | 3.3e-08 | 34.3 | Toprim domain |
XP_057812241.1 |
Pfam | PF13155 |
Toprim_2 | Family | 280 | 386 | 1.5e-07 | 32.4 | Toprim-like |
XP_057812242.1 |
Pfam | PF01751 |
Toprim | Family | 260 | 337 | 8.6e-06 | 26.6 | Toprim domain |
XP_057812242.1 |
Pfam | PF13662 |
Toprim_4 | Domain | 260 | 343 | 2.5e-13 | 50.7 | Toprim domain |
XP_057812242.1 |
Pfam | PF13155 |
Toprim_2 | Family | 260 | 364 | 1.3e-06 | 29.4 | Toprim-like |
XP_057812243.1 |
Pfam | PF13662 |
Toprim_4 | Domain | 249 | 337 | 3.8e-16 | 59.8 | Toprim domain |
XP_057812243.1 |
Pfam | PF01751 |
Toprim | Family | 250 | 331 | 4.1e-08 | 34.0 | Toprim domain |
XP_057812243.1 |
Pfam | PF13155 |
Toprim_2 | Family | 252 | 358 | 1.3e-07 | 32.6 | Toprim-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。