Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002705`

染色体: Chr05 坐标: 31099329-31105757 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002705`
名称	SmilChr05G002705
描述	coiled-coil domain-containing protein SCD2-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	31099329 - 31105757 / `-`

ID 对照

NCBI Gene ID	`LOC131026444`
GeneID	`131026444`
locus_tag	`-`
NCBI Name	`LOC131026444`
原始查询	`LOC131026444`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coiled-coil domain-containing protein SCD2-like
产物	coiled-coil domain-containing protein SCD2-like
Arabidopsis	`AT4G08630` (AT4G08630) fas-binding factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826428] identity=44.1; qcov=0.988; evalue=8.94e-156; confidence=medium
Rice	`Os01g0928100` - identity=48.9; qcov=0.704; evalue=6.16e-130; confidence=high
GO	GO:0000911 (cytokinesis by cell plate formation)
KEGG	-
Pfam	PF27823 (SCD2_helical_N); PF30610 (SCD2_C)
InterPro	-
eggNOG	-
NR	GeneID:131026444

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057812295.1`
2	Phragmoplast	Phragmoplast	0.20000	`XP_057812295.1`
3	Spindle	Spindle	0.20000	`XP_057812295.1`
4	Spindle pole	Spindle pole	0.20000	`XP_057812295.1`
5	Nucleus	细胞核	0.00000	`XP_057812295.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:31099546`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B24,B94,C35
`Chr5:31099684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C42,C82,C86
`Chr5:31100649`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C85
`Chr5:31100894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C42,C82,C86
`Chr5:31101248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:31101269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B34,C77
`Chr5:31101800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,C35
`Chr5:31102477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,C16,D1
`Chr5:31103040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C18
`Chr5:31103102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,C18
`Chr5:31103438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C46
`Chr5:31103456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812295.1

668 aa

334

668

SCD2_helical_N

SCD2_C

PF27823 SCD2_helical_N 306-391 aa PF30610 SCD2_C 430-647 aa

XP_057812296.1

668 aa

334

668

SCD2_helical_N

SCD2_C

PF27823 SCD2_helical_N 306-391 aa PF30610 SCD2_C 430-647 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812295.1`	Pfam	`PF27823`	SCD2_helical_N	Domain	306	391	1.5e-33	115.5	SCD2 N-terminal domain
`XP_057812295.1`	Pfam	`PF30610`	SCD2_C	Domain	430	647	2.7e-99	332.0	SCD2, C-terminal domain
`XP_057812296.1`	Pfam	`PF27823`	SCD2_helical_N	Domain	306	391	1.5e-33	115.5	SCD2 N-terminal domain
`XP_057812296.1`	Pfam	`PF30610`	SCD2_C	Domain	430	647	2.7e-99	332.0	SCD2, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956312.1
CTCCGAACCCAACTCCACTCCCCACACAAATACAGCGCTAAACTACAACAAAGAAAAGGAGATCCGCGATCGATACACACAAATATATGAAAAGGGAGACACAGATAATTTGATCTTTTTCTTCCCAAATTTCTACAAGAAGCAGATTGGGTGAATTCAGAATATTATCGGCAATAGAGTGTTTGATCATGACATCTCCAATGCATCAACATTCTCGGTCGACGTCGACTAGCCTAAGTATGAAGAAACCACAGACCAAG...

XM_057956313.1
CTCCATGCATGAATCCGACACCATTGCATATATATACCTCGTATGTTTCGAAATGCCCCAACCCTTTGCATGTATTTGAAACTGAAAAACTGGGTTCACGGATTGATTTATTTTGAGGCTTTCTAGAAGCAGATTGGGTGAATTCAGAATATTATCGGCAATAGAGTGTTTGATCATGACATCTCCAATGCATCAACATTCTCGGTCGACGTCGACTAGCCTAAGTATGAAGAAACCACAGACCAAGGCAGCTGCTCAAC...

CDS

2 records

下载 CDS FASTA

LOC131026444
ATGACATCTCCAATGCATCAACATTCTCGGTCGACGTCGACTAGCCTAAGTATGAAGAAACCACAGACCAAGGCAGCTGCTCAACGGCTTGCGGAGGTTATGGCTCATCAAGCAGTCGATGATGAAGAGGAGGAGGATGAACTATATGATCTCAACTCATCAGCTGGTATAGGACTTGCCGGCGGAAGGCAAGCTAGAAATCGTTCTCCAATGTCAGTTCGTAACTCAGTAGATCAGGCACCATCTTCACGTCCAATAGC...

Protein

2 records

下载 Protein FASTA

XP_057812295.1
MTSPMHQHSRSTSTSLSMKKPQTKAAAQRLAEVMAHQAVDDEEEEDELYDLNSSAGIGLAGGRQARNRSPMSVRNSVDQAPSSRPIAGARGAASLEQQPSSARLRPAKPLEPSPAVEQPSSARHRPAQPSSTAEQQQPSSARYRHARSKPLEPSSNAASVEQQQPSSARTLASVEQQQPSSARHRPQSRPVEPSPSLNYSIPGRSSLQTNSSEEPPQPASARSAGRSSSSISSLEQPSSARVVGRPNLRVKTVPMVPSSV...

XP_057812296.1
MTSPMHQHSRSTSTSLSMKKPQTKAAAQRLAEVMAHQAVDDEEEEDELYDLNSSAGIGLAGGRQARNRSPMSVRNSVDQAPSSRPIAGARGAASLEQQPSSARLRPAKPLEPSPAVEQPSSARHRPAQPSSTAEQQQPSSARYRHARSKPLEPSSNAASVEQQQPSSARTLASVEQQQPSSARHRPQSRPVEPSPSLNYSIPGRSSLQTNSSEEPPQPASARSAGRSSSSISSLEQPSSARVVGRPNLRVKTVPMVPSSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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