当前解析结果
SmilChr05G000012| 统一新 Gene ID | SmilChr05G000012 |
|---|---|
| 名称 | SmilChr05G000012 |
| 描述 | uncharacterized SmilChr05G000012 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 53317 - 59687 / - |
| NCBI Gene ID | LOC131026496 |
|---|---|
| GeneID | 131026496 |
| locus_tag | - |
| NCBI Name | LOC131026496 |
| 原始查询 | LOC131026496 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:NCBI gene (formerly Entrezgene);Acc:830928]; symbol=AT5G10630; hit=AT5G10630; species=arabidopsis; confidence=high |
| 产物 | Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:NCBI gene (formerly Entrezgene);Acc:830928]; symbol=AT5G10630; hit=AT5G10630; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G10630 (AT5G10630)Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:NCBI gene (formerly Entrezgene);Acc:830928] identity=61.1; qcov=0.972; evalue=0; confidence=high |
| Rice | Os01g0116600 (SPL33)- identity=55.6; qcov=0.959; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0006412 (translation) |
| KEGG | smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00009 (GTP_EFTU); PF03143 (GTP_EFTU_D3); PF03144 (GTP_EFTU_D2); PF22594 (GTP-eEF1A_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026496 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057812348.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057812345.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057812350.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057812350.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812350.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:53590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr5:53789 |
CA |
C |
1bp_deletion | frameshift_variant | 27 | A19,A4,A6,B100,B123,B126,B130,B14,B16,B31,B46,B51,B55,B67,B69,B85,B89,C20,C39,C4,C40,C47,C5,C51,C53,C82,C87 |
Chr5:53809 |
C |
CA |
1bp_insertion | frameshift_variant | 26 | A19,A4,A6,B100,B123,B126,B130,B14,B16,B31,B46,B51,B55,B67,B69,B85,C20,C39,C4,C40,C47,C5,C51,C53,C82,D3 |
Chr5:53813 |
C |
T |
EMS_canonical_SNV | stop_gained | 26 | A19,A4,A6,B100,B123,B126,B130,B14,B16,B31,B46,B51,B55,B67,B69,B85,C20,C39,C4,C40,C47,C5,C51,C53,C82,D3 |
Chr5:53814 |
C |
T |
EMS_canonical_SNV | stop_gained | 54 | A10,A13,A18,A22,A3,A5,A9,B101,B111,B114,B135,B17,B20,B34,B38,B39,B47,B49,B50,B52,B53,B58,B6,B72,B75,B80,B82,B83,B9,B97,C13,C27,C3,C30,C31,C33,C34,C43,C45,C46,C50,C55,C56,C58,C67,C73,C75,C76,C79,C8,C80,C84,D6,D9 |
Chr5:53821 |
C |
CT |
1bp_insertion | frameshift_variant | 28 | A19,A4,A6,B100,B123,B126,B130,B14,B16,B31,B46,B51,B55,B67,B69,B85,B89,C20,C39,C4,C40,C47,C5,C51,C53,C82,C87,D3 |
Chr5:53926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr5:54013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C55,C81 |
Chr5:54034 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B90,B92,C84 |
Chr5:54164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:54220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr5:54227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B121,B13,B19,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812345.1PF00009
GTP_EFTU 285-497 aa
PF03144
GTP_EFTU_D2 530-593 aa
PF22594
GTP-eEF1A_C 605-669 aa
XP_057812347.1PF00009
GTP_EFTU 285-497 aa
PF03144
GTP_EFTU_D2 530-593 aa
PF03143
GTP_EFTU_D3 599-706 aa
PF22594
GTP-eEF1A_C 605-704 aa
XP_057812348.1PF00009
GTP_EFTU 265-477 aa
PF03144
GTP_EFTU_D2 510-573 aa
PF22594
GTP-eEF1A_C 585-649 aa
XP_057812349.1PF00009
GTP_EFTU 265-477 aa
PF03144
GTP_EFTU_D2 510-573 aa
PF03143
GTP_EFTU_D3 579-686 aa
PF22594
GTP-eEF1A_C 585-684 aa
XP_057812350.1PF00009
GTP_EFTU 212-424 aa
PF03144
GTP_EFTU_D2 457-520 aa
PF22594
GTP-eEF1A_C 532-596 aa
XP_057812351.1PF00009
GTP_EFTU 212-424 aa
PF03144
GTP_EFTU_D2 457-520 aa
PF03143
GTP_EFTU_D3 526-633 aa
PF22594
GTP-eEF1A_C 532-631 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812345.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 285 | 497 | 7.6e-48 | 163.3 | Elongation factor Tu GTP binding domain |
XP_057812345.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 530 | 593 | 1.6e-09 | 38.8 | Elongation factor Tu domain 2 |
XP_057812345.1 |
Pfam | PF22594 |
GTP-eEF1A_C | Domain | 605 | 669 | 2.7e-13 | 50.9 | GTP-eEF1A C-terminal domain-like |
XP_057812347.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 285 | 497 | 8e-48 | 163.2 | Elongation factor Tu GTP binding domain |
XP_057812347.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 530 | 593 | 1.5e-09 | 38.8 | Elongation factor Tu domain 2 |
XP_057812347.1 |
Pfam | PF03143 |
GTP_EFTU_D3 | Domain | 599 | 706 | 3.5e-14 | 53.7 | Elongation factor Tu C-terminal domain |
XP_057812347.1 |
Pfam | PF22594 |
GTP-eEF1A_C | Domain | 605 | 704 | 2e-29 | 102.7 | GTP-eEF1A C-terminal domain-like |
XP_057812348.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 265 | 477 | 7.1e-48 | 163.4 | Elongation factor Tu GTP binding domain |
XP_057812348.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 510 | 573 | 1.5e-09 | 38.9 | Elongation factor Tu domain 2 |
XP_057812348.1 |
Pfam | PF22594 |
GTP-eEF1A_C | Domain | 585 | 649 | 2.5e-13 | 51.0 | GTP-eEF1A C-terminal domain-like |
XP_057812349.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 265 | 477 | 7.5e-48 | 163.3 | Elongation factor Tu GTP binding domain |
XP_057812349.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 510 | 573 | 1.4e-09 | 38.9 | Elongation factor Tu domain 2 |
XP_057812349.1 |
Pfam | PF03143 |
GTP_EFTU_D3 | Domain | 579 | 686 | 3.3e-14 | 53.8 | Elongation factor Tu C-terminal domain |
XP_057812349.1 |
Pfam | PF22594 |
GTP-eEF1A_C | Domain | 585 | 684 | 1.8e-29 | 102.8 | GTP-eEF1A C-terminal domain-like |
XP_057812350.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 212 | 424 | 5.9e-48 | 163.7 | Elongation factor Tu GTP binding domain |
XP_057812350.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 457 | 520 | 1.3e-09 | 39.1 | Elongation factor Tu domain 2 |
XP_057812350.1 |
Pfam | PF22594 |
GTP-eEF1A_C | Domain | 532 | 596 | 2.2e-13 | 51.2 | GTP-eEF1A C-terminal domain-like |
XP_057812351.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 212 | 424 | 6.2e-48 | 163.6 | Elongation factor Tu GTP binding domain |
XP_057812351.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 457 | 520 | 1.2e-09 | 39.2 | Elongation factor Tu domain 2 |
XP_057812351.1 |
Pfam | PF03143 |
GTP_EFTU_D3 | Domain | 526 | 633 | 2.7e-14 | 54.0 | Elongation factor Tu C-terminal domain |
XP_057812351.1 |
Pfam | PF22594 |
GTP-eEF1A_C | Domain | 532 | 631 | 1.6e-29 | 103.0 | GTP-eEF1A C-terminal domain-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。