当前解析结果
SmilChr05G000035| 统一新 Gene ID | SmilChr05G000035 |
|---|---|
| 名称 | SmilChr05G000035 |
| 描述 | succinate dehydrogenase subunit 4, mitochondrial |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 163018 - 164922 / - |
| NCBI Gene ID | LOC131026521 |
|---|---|
| GeneID | 131026521 |
| locus_tag | - |
| NCBI Name | LOC131026521 |
| 原始查询 | LOC131026521 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog |
|---|---|
| 描述 | succinate dehydrogenase subunit 4, mitochondrial |
| 产物 | succinate dehydrogenase subunit 4%2C mitochondrial |
| Arabidopsis | AT2G46505 (SDH4)succinate dehydrogenase subunit 4 [Source:NCBI gene (formerly Entrezgene);Acc:819261] identity=39.5; qcov=0.844; evalue=6e-15; confidence=low |
| Rice | Os01g0935900 (SDH4)- identity=30.3; qcov=0.702; evalue=9.89e-09; confidence=low |
| GO | GO:0005743 (mitochondrial inner membrane); GO:0005749 (GO:0005749); GO:0006099 (tricarboxylic acid cycle); GO:0006121 (mitochondrial electron transport, succinate to ubiquinone) |
| KEGG | smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026521 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057812384.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057812384.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057812384.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057812384.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812384.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:163331 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr5:163436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr5:164476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,C75,C9 |
Chr5:164505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr5:164531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B110,B65 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。