Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000060`

染色体: Chr05 坐标: 281832-284801 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000060`
名称	SmilChr05G000060
描述	probable disease resistance RPP8-like protein 4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	281832 - 284801 / `+`

ID 对照

NCBI Gene ID	`LOC131026543`
GeneID	`131026543`
locus_tag	`-`
NCBI Name	`LOC131026543`
原始查询	`LOC131026543`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance RPP8-like protein 4
产物	probable disease resistance RPP8-like protein 4
Arabidopsis	`AT5G48620` (AT5G48620) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=28.2; qcov=0.829; evalue=1.47e-18; confidence=low
Rice	`Os05g0479800` - identity=32.8; qcov=0.513; evalue=1.49e-18; confidence=low
GO	GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding); GO:0043531 (ADP binding); GO:0050832 (defense response to fungus)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026543

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057812412.1`
2	Cell membrane	细胞膜	0.60000	`XP_057812413.1`
3	Cytosol	细胞质基质	0.40000	`XP_057812412.1`
4	Nucleus	细胞核	0.20000	`XP_057812412.1`
5	Chromosome	染色体	0.00000	`XP_057812412.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:281920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B90
`Chr5:281927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr5:281949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C12,C68
`Chr5:282004`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	C8
`Chr5:282004`	`TCA`	`T`	2bp_deletion	CDS_variant	1	C8
`Chr5:282007`	`A`	`AGG`	2bp_insertion	frameshift_variant	1	C8
`Chr5:282007`	`A`	`AGG`	2bp_insertion	CDS_variant	1	C8
`Chr5:282055`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C12,C70,C8
`Chr5:282129`	`CCA`	`C`	2bp_deletion	frameshift_variant	1	D4
`Chr5:282129`	`CCA`	`C`	2bp_deletion	CDS_variant	1	D4
`Chr5:282140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:282198`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C70,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812412.1

516 aa

258

516

LRR_14

PF23598 LRR_14 184-466 aa

XP_057812413.1

351 aa

176

351

NB-ARC

PF00931 NB-ARC 159-325 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812412.1`	Pfam	`PF23598`	LRR_14	Repeat	184	466	5.7e-18	65.5	Leucine-rich repeat region
`XP_057812413.1`	Pfam	`PF00931`	NB-ARC	Domain	159	325	5.9e-27	95.0	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956430.1
TATTGTGCCTTGATAGCTCATATATCAGTGATGGCGGCTTATGGTGCAGCGACCTCTCTCAAGAATACGATTCTGCGTATTCTACAATCGTCTCGCATTTCCCTCGTTTCCCACTCTCCACAAATCTTACTACCTGCCTACGAAGAGATGGATCGATTGCAGAAAGTTCTGCTCAAATTGGACGACACCAGCTGCTGCAAGATCAGAACGAAGGTGAATGCTGCAGATGAACGAATCAAAGAGGCAGTTTGGGAATTTGA...

XM_057956429.1
GCCTTGATAGCTCATATATCAGTGATGGCGGCTTATGGTGCAGCGACCTCTCTCAAGAATACGATTCTGCGTATTCTACAATCGTCTCGCATTTCCCTCGTTTCCCACTCTCCACAAATCTTACTACCTGCCTACGAAGAGATGGATCGATTGCAGAAAGTTCTGCTCAAATTGGACGACACCAGCTGCTGCAAGATCAGAACGAAGGTGAATGCTGCAGATGAACGAATCAAAGAGGCAGTTTGGGAATTTGAAGATTT...

CDS

2 records

下载 CDS FASTA

LOC131026543
ATGGCGGCTTATGGTGCAGCGACCTCTCTCAAGAATACGATTCTGCGTATTCTACAATCGTCTCGCATTTCCCTCGTTTCCCACTCTCCACAAATCTTACTACCTGCCTACGAAGAGATGGATCGATTGCAGAAAGTTCTGCTCAAATTGGACGACACCAGCTGCTGCAAGATCAGAACGAAGGTGAATGCTGCAGATGAACGAATCAAAGAGGCAGTTTGGGAATTTGAAGATTTACTTGAATCCCATATCTTACCTCA...

LOC131026543
ATGATAGTTACGGTTGCAGAGCTCCTATCAAAAGCCGACAAGACCCCAGAATACTGGACTGAGGTGCTCATCAAACAACATGGTTCGATCTTTGTGACTGCATATAATCAAATATCAGAGGTACTTTTTCCAAGCTATGACTACTTACCCCAACATTTTAAAATGTTTTTTCTTTATATGGGAGCTTTCCCTCCATATATCGATATCCATCCAATCCTGATCAATAGTTTGTCGAGTGCTGAGGGGTTTGTTGAACCAAT...

Protein

2 records

下载 Protein FASTA

XP_057812412.1
MIVTVAELLSKADKTPEYWTEVLIKQHGSIFVTAYNQISEVLFPSYDYLPQHFKMFFLYMGAFPPYIDIHPILINSLSSAEGFVEPIGEESFADLSNECWKKLSRRYHLVLEIANYKFPVSSYRVHSCLQHLCKKETSRIKFMHVLESCDDVIRDQRRLCVHWNSLFCFKQVCDSIKSDCASTVRSLLCFGPCHSYPVPILDMGLKLLRVLDAAYVRFYHIPIEILKLVCLQYLALTCNGDLPPSISNLFHLQFLIIGRH...

XP_057812413.1
MAAYGAATSLKNTILRILQSSRISLVSHSPQILLPAYEEMDRLQKVLLKLDDTSCCKIRTKVNAADERIKEAVWEFEDLLESHILPQILPQLESSRDHLSFSVDLQSLQHRVDSLVEKMKMMEEEYTNEMENMPEEEGKPISSRIDHGGINSKMVGLSDRIEKVRDNLLDEYNYQPYSIIGMGGIGKTTLAKHIFEDPSIRSHFEFRAWVNVGRKCETDELLRCVLAQVDPNAHKILTQGGDHDGEELVGVLRERLKDVR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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