当前解析结果
SmilChr05G000156| 统一新 Gene ID | SmilChr05G000156 |
|---|---|
| 名称 | SmilChr05G000156 |
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1253918 - 1257695 / - |
| NCBI Gene ID | LOC131026594 |
|---|---|
| GeneID | 131026594 |
| locus_tag | - |
| NCBI Name | LOC131026594 |
| 原始查询 | LOC131026594 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 产物 | putative late blight resistance protein homolog R1B-17 |
| Arabidopsis | AT5G48620 (AT5G48620)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=25.8; qcov=0.882; evalue=5.42e-23; confidence=low |
| Rice | Os11g0633500- identity=33.3; qcov=0.55; evalue=1.48e-25; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026594 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057812481.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057812481.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057812483.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057812483.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812483.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1254282 |
AAT |
A |
2bp_deletion | frameshift_variant | 25 | B104,B11,B112,B119,B120,B124,B134,B136,B2,B24,B38,B49,B51,B82,B88,C13,C24,C44,C49,C50,C55,C60,C71,C80,D2 |
Chr5:1254293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,B98 |
Chr5:1254394 |
AT |
A |
1bp_deletion | frameshift_variant | 19 | A19,B1,B109,B121,B138,B15,B20,B30,B31,B39,C16,C19,C28,C51,C56,C65,C69,C84,D5 |
Chr5:1254408 |
AC |
A |
1bp_deletion | frameshift_variant | 5 | B13,B83,C11,C29,C37 |
Chr5:1254408 |
AC |
A |
1bp_deletion | CDS_variant | 5 | B13,B83,C11,C29,C37 |
Chr5:1254410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B13,B83,C11,C29,C37 |
Chr5:1254457 |
A |
AT |
1bp_insertion | frameshift_variant | 10 | B120,B139,B18,B42,B5,B74,B85,C30,C41,C67 |
Chr5:1254480 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B70,B77,B79 |
Chr5:1254803 |
G |
GTC |
2bp_insertion | frameshift_variant | 14 | A8,A9,B100,B103,B23,B63,B67,B69,C1,C21,C4,C45,C76,C79 |
Chr5:1254808 |
AT |
A |
1bp_deletion | frameshift_variant | 23 | A23,A8,A9,B100,B103,B23,B39,B45,B63,B67,B69,B7,B91,C1,C18,C21,C34,C4,C45,C7,C76,C79,C83 |
Chr5:1254834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,C39,D4 |
Chr5:1254835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812481.1PF00931
NB-ARC 163-325 aa
PF23598
LRR_14 553-818 aa
XP_057812482.1PF00931
NB-ARC 163-325 aa
XP_057812483.1PF00931
NB-ARC 163-325 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812481.1 |
Pfam | PF00931 |
NB-ARC | Domain | 163 | 325 | 1.6e-26 | 93.6 | NB-ARC domain |
XP_057812481.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 553 | 818 | 9.5e-15 | 54.9 | Leucine-rich repeat region |
XP_057812482.1 |
Pfam | PF00931 |
NB-ARC | Domain | 163 | 325 | 4.6e-27 | 95.4 | NB-ARC domain |
XP_057812483.1 |
Pfam | PF00931 |
NB-ARC | Domain | 163 | 325 | 4.2e-27 | 95.5 | NB-ARC domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。