当前解析结果
SmilChr05G000147| 统一新 Gene ID | SmilChr05G000147 |
|---|---|
| 名称 | SmilChr05G000147 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1190840 - 1194149 / - |
| NCBI Gene ID | LOC131026605 |
|---|---|
| GeneID | 131026605 |
| locus_tag | - |
| NCBI Name | LOC131026605 |
| 原始查询 | LOC131026605 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=25.3; qcov=1.02; evalue=1.13e-37; confidence=low |
| Rice | Os07g0186500- identity=27; qcov=0.664; evalue=8.67e-36; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026605 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057812498.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057812498.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057812498.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057812498.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812498.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1191226 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | B50 |
Chr5:1191226 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | B50 |
Chr5:1191230 |
G |
GGT |
2bp_insertion | frameshift_variant | 8 | A11,B34,B43,B50,C35,C82,D3,D8 |
Chr5:1191231 |
AC |
A |
1bp_deletion | frameshift_variant | 8 | A11,B34,B43,B50,C35,C82,D3,D8 |
Chr5:1191273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B15,C41 |
Chr5:1191293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B15 |
Chr5:1191308 |
AAT |
A |
2bp_deletion | frameshift_variant | 13 | B122,B29,B42,B43,B65,B77,B86,B94,C23,C35,C59,C6,C64 |
Chr5:1191310 |
TAC |
T |
2bp_deletion | frameshift_variant | 26 | B105,B109,B113,B13,B139,B14,B19,B26,B27,B33,B36,B4,B56,B69,C45,C57,C59,C60,C71,C75,C76,C78,C8,C87,D4,D8 |
Chr5:1191315 |
G |
GCT |
2bp_insertion | frameshift_variant | 14 | B122,B29,B42,B43,B65,B77,B85,B86,B94,C23,C35,C59,C6,C64 |
Chr5:1191322 |
A |
AC |
1bp_insertion | frameshift_variant | 8 | A2,A4,B123,B48,B81,C5,C80,C84 |
Chr5:1191324 |
GA |
G |
1bp_deletion | frameshift_variant | 8 | A2,A4,B123,B48,B81,C5,C80,C84 |
Chr5:1191359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812498.1PF00931
NB-ARC 160-321 aa
PF23598
LRR_14 544-808 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812498.1 |
Pfam | PF00931 |
NB-ARC | Domain | 160 | 321 | 6.2e-26 | 91.7 | NB-ARC domain |
XP_057812498.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 544 | 808 | 2.6e-14 | 53.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。