Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000208`

染色体: Chr05 坐标: 1649337-1652509 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000208`
名称	SmilChr05G000208
描述	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1649337 - 1652509 / `-`

ID 对照

NCBI Gene ID	`LOC131026610`
GeneID	`131026610`
locus_tag	`-`
NCBI Name	`LOC131026610`
原始查询	`LOC131026610`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
产物	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
Arabidopsis	`AT3G03770` (AT3G03770) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821164] identity=50.1; qcov=0.959; evalue=0; confidence=high
Rice	`Os07g0166700` (P0039H02.137) - identity=44.5; qcov=0.992; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026610

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057812505.1`
2	Nucleus	细胞核	0.00000	`XP_057812505.1`
3	Chromosome	染色体	0.00000	`XP_057812505.1`
4	Centromere	着丝粒	0.00000	`XP_057812505.1`
5	Chromatin	染色质	0.00000	`XP_057812505.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1649526`	`CAT`	`C`	2bp_deletion	frameshift_variant	143	A10,A16,A18,A19,A20,A25,A3,A4,A6,A7,A9,B1,B100,B101,B102,B103,B104,B105,B109,B110,B113,B114,B115,B122,B123,B125,B126,B128,B129,B13,B131,B134,B135,B137,B138,B16,B17,B22,B26,B27,B28,B30,B34,B35,B38,B39,B4,B41,B42,B43,B44,B45,B46,B47,B48,B51,B52,B53,B54,B56,B61,B62,B63,B66,B69,B7,B70,B71,B73,B76,B77,B79,B8,B80,B81,B82,B83,B85,B86,B91,B95,B96,B97,B98,C1,C11,C13,C16,C17,C18,C19,C20,C21,C23,C24,C25,C26,C27,C29,C3,C31,C33,C34,C4,C41,C43,C44,C47,C48,C49,C52,C53,C55,C56,C58,C59,C60,C63,C64,C65,C66,C69,C7,C71,C72,C74,C75,C76,C77,C78,C79,C80,C81,C82,C83,C84,C86,D1,D10,D11,D3,D5,D7
`Chr5:1649605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B122
`Chr5:1649638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,B32,B33,B35,B68
`Chr5:1649668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B38
`Chr5:1649671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,B59
`Chr5:1649707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr5:1649773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B16
`Chr5:1649777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr5:1649899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr5:1649995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C16,C75
`Chr5:1650000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,D10
`Chr5:1650156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B136,B2,B33,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812505.1

765 aa

382

765

LRR_14

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF23598 LRR_14 98-329 aa PF13855 LRR_8 153-213 aa PF00560 LRR_1 154-176 aa PF00560 LRR_1 179-200 aa PF13855 LRR_8 245-306 aa PF00560 LRR_1 271-293 aa PF13855 LRR_8 271-330 aa PF00560 LRR_1 295-315 aa PF00560 LRR_1 320-340 aa PF00069 Pkinase 483-728 aa PF07714 PK_Tyr_Ser-Thr 484-624 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812505.1`	Pfam	`PF23598`	LRR_14	Repeat	98	329	2e-16	60.4	Leucine-rich repeat region
`XP_057812505.1`	Pfam	`PF13855`	LRR_8	Repeat	153	213	1.8e-21	76.4	Leucine rich repeat
`XP_057812505.1`	Pfam	`PF00560`	LRR_1	Repeat	154	176	2.1e-19	66.1	Leucine Rich Repeat
`XP_057812505.1`	Pfam	`PF00560`	LRR_1	Repeat	179	200	2.1e-19	66.1	Leucine Rich Repeat
`XP_057812505.1`	Pfam	`PF13855`	LRR_8	Repeat	245	306	1.8e-21	76.4	Leucine rich repeat
`XP_057812505.1`	Pfam	`PF00560`	LRR_1	Repeat	271	293	2.1e-19	66.1	Leucine Rich Repeat
`XP_057812505.1`	Pfam	`PF13855`	LRR_8	Repeat	271	330	1.8e-21	76.4	Leucine rich repeat
`XP_057812505.1`	Pfam	`PF00560`	LRR_1	Repeat	295	315	2.1e-19	66.1	Leucine Rich Repeat
`XP_057812505.1`	Pfam	`PF00560`	LRR_1	Repeat	320	340	2.1e-19	66.1	Leucine Rich Repeat
`XP_057812505.1`	Pfam	`PF00069`	Pkinase	Domain	483	728	9.8e-10	39.0	Protein kinase domain
`XP_057812505.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	484	624	1e-12	48.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057956522.1
TGTAACAACCAAATTCTTTGTGTAGTTTCTGCTACGTGTTGGTAAAACTAATGCATTTTTCTCCAAAAAAAAAATCTTTTTTTTTTTTGGCAGAACATGACAAATCTATAGATGTGTAACATGTGTTACACCTTACAAAGCATCCAAGAATTGAGGGAAATGGGAAAGAGTAGTAAAAGTTTGTAGCTGAATACATATGCATACATGCAGTGGTGTTTCTTGAATTCATATCAATGGCTAAAGCAAGAATCTTTCTCTTC...

CDS

1 records

下载 CDS FASTA

LOC131026610
ATGGCTAAAGCAAGAATCTTTCTCTTCATCTTCATGTTTTTGGTGCACCCCATTTTCTCAAACCAGTTGGGGAATTCCCAGTTCCAAACCCTTGTGAGAATCAAGCAGCTGCTCAACTTCCCAGAGGTGGAAACCAGCAGCTGGAGTGAGGTTGAAGATGAAGATGTCTGCAACACTGAGGCAACTCAGATTCTCTCACTAGCTTGCTATGAAGGCAACATCACCCAGCTCCACATCACTGGTAACTACTGGTTTCCTCA...

Protein

1 records

下载 Protein FASTA

XP_057812505.1
MAKARIFLFIFMFLVHPIFSNQLGNSQFQTLVRIKQLLNFPEVETSSWSEVEDEDVCNTEATQILSLACYEGNITQLHITGNYWFPHLSQDFSAASLFSNIAQLPNLKVLSLVSLGLEGPLPPEIGGLVSLEILNVTSNMFHGSIPREMSFIRNLQTLILDHNRFEGEIPNWIGSLPALRVLSVKNNSFSGSFPRAFSSMVNLRALVLTANNLSGEVAELHNLTNLQVLDLEDNNLGPHFPSVPPKLVSLVLRKNRFHST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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