Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000213`

染色体: Chr05 坐标: 1676458-1706369 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000213`
名称	SmilChr05G000213
描述	uncharacterized SmilChr05G000213
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1676458 - 1706369 / `+`

ID 对照

NCBI Gene ID	`LOC131026613`
GeneID	`131026613`
locus_tag	`-`
NCBI Name	`LOC131026613`
原始查询	`LOC131026613`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830368]; symbol=AT5G04885; hit=AT5G04885; species=arabidopsis; confidence=high
产物	Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830368]; symbol=AT5G04885; hit=AT5G04885; species=arabidopsis; confidence=high
Arabidopsis	`AT5G04885` (AT5G04885) Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830368] identity=71.5; qcov=0.96; evalue=0; confidence=high
Rice	`Os03g0749300` (OsBGLU1) - identity=71.2; qcov=0.945; evalue=0; confidence=high
GO	GO:0008422 (beta-glucosidase activity); GO:0009251 (glucan catabolic process)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C)
InterPro	-
eggNOG	-
NR	GeneID:131026613

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057812510.1`
2	Cell membrane	细胞膜	0.60000	`XP_057812509.1`
3	Vacuole	液泡	0.40000	`XP_057812508.1`
4	Lysosome	溶酶体	0.20000	`XP_057812508.1`
5	Nucleus	细胞核	0.00000	`XP_057812509.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1676632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr5:1676680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr5:1676833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr5:1678831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B133,B44,C11,C7
`Chr5:1678849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,C59,D10
`Chr5:1678904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,B32,B33,B46,B68
`Chr5:1678959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B115,B66
`Chr5:1679012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr5:1679267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr5:1679273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B71,C35
`Chr5:1679445`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr5:1679499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B128,B74,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812508.1

682 aa

341

682

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 49-375 aa PF01915 Glyco_hydro_3_C 414-623 aa

XP_057812509.1

659 aa

330

659

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 49-375 aa PF01915 Glyco_hydro_3_C 414-623 aa

XP_057812510.1

653 aa

326

653

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 49-375 aa PF01915 Glyco_hydro_3_C 414-623 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812508.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	49	375	1.8e-70	238.6	Glycosyl hydrolase family 3 N terminal domain
`XP_057812508.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	414	623	3.3e-37	129.1	Glycosyl hydrolase family 3 C-terminal domain
`XP_057812509.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	49	375	1.6e-70	238.8	Glycosyl hydrolase family 3 N terminal domain
`XP_057812509.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	414	623	3.1e-37	129.2	Glycosyl hydrolase family 3 C-terminal domain
`XP_057812510.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	49	375	1.6e-70	238.8	Glycosyl hydrolase family 3 N terminal domain
`XP_057812510.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	414	623	3e-37	129.2	Glycosyl hydrolase family 3 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057956525.1
ATCCAACCACGTTTCAAGAATCTCCACCAATCCACCCACACTTTTCCCACTACGCTCAACTCACTCACTACTTTATCTCTCTAGAAACAGCTCCATTTTTGACAGTTGCCGGCACCCATTAAGCCAAGTTGCAATCTTGAGCAGGCCGTTGGCGCAGAGCAGCTGAAATATGAAGTGGGTTTGGACAGTGTGGGTGTGGAGTATGGTGATCCTGTGGGGCCGCAGGGTGGCAATGGGGAAAGAAGAATACTTCAAGTACA...

XM_057956527.1
CACGTTTCAAGAATCTCCACCAATCCACCCACACTTTTCCCACTACGCTCAACTCACTCACTACTTTATCTCTCTAGAAACAGCTCCATTTTTGACAGTTGCCGGCACCCATTAAGCCAAGTTGCAATCTTGAGCAGGCCGTTGGCGCAGAGCAGCTGAAATATGAAGTGGGTTTGGACAGTGTGGGTGTGGAGTATGGTGATCCTGTGGGGCCGCAGGGTGGCAATGGGGAAAGAAGAATACTTCAAGTACAAGGACCC...

CDS

3 records

下载 CDS FASTA

LOC131026613
ATGAAGTGGGTTTGGACAGTGTGGGTGTGGAGTATGGTGATCCTGTGGGGCCGCAGGGTGGCAATGGGGAAAGAAGAATACTTCAAGTACAAGGACCCAAAACAGCCTGTTGGGGCGAGAGTTGAAGATCTTCTTGGTAGGATGACTTTAGAGGAGAAGATTGGACAGATGGTTCAGATTGAAAGGATTTCCGCCACTCCTGACATCATTAAAGATCACAACATTGGGAGCCTGTTAAGTGGTGGTGGGAGTGTACCTCT...

Protein

3 records

下载 Protein FASTA

XP_057812508.1
MKWVWTVWVWSMVILWGRRVAMGKEEYFKYKDPKQPVGARVEDLLGRMTLEEKIGQMVQIERISATPDIIKDHNIGSLLSGGGSVPLPQATAADWVNMINNFQKASLSTRLGIPMIYGIDAVHGHNNVYNATIFPHNIGLGATRDPDLLRRIGDATALEIRATGIPYTFAPCIAVCRDPRWGRCYESYSEDPKVVQEMTEIIPGLQGEIPNGSRKGVPYVIGKNKVAACAKHFVGDGGTTKGINENNTLIDMHGLLSVHM...

XP_057812509.1
MKWVWTVWVWSMVILWGRRVAMGKEEYFKYKDPKQPVGARVEDLLGRMTLEEKIGQMVQIERISATPDIIKDHNIGSLLSGGGSVPLPQATAADWVNMINNFQKASLSTRLGIPMIYGIDAVHGHNNVYNATIFPHNIGLGATRDPDLLRRIGDATALEIRATGIPYTFAPCIAVCRDPRWGRCYESYSEDPKVVQEMTEIIPGLQGEIPNGSRKGVPYVIGKNKVAACAKHFVGDGGTTKGINENNTLIDMHGLLSVHM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器