当前解析结果
SmilChr05G000203| 统一新 Gene ID | SmilChr05G000203 |
|---|---|
| 名称 | SmilChr05G000203 |
| 描述 | ETHYLENE INSENSITIVE 3-like 1 protein |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1612524 - 1615336 / + |
| NCBI Gene ID | LOC131026617 |
|---|---|
| GeneID | 131026617 |
| locus_tag | - |
| NCBI Name | LOC131026617 |
| 原始查询 | LOC131026617 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ETHYLENE INSENSITIVE 3-like 1 protein |
| 产物 | ETHYLENE INSENSITIVE 3-like 1 protein |
| Arabidopsis | AT3G20770 (EIN3)Ethylene insensitive 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:821625] identity=60.9; qcov=0.86; evalue=0; confidence=high |
| Rice | Os03g0324200 (EIL1)- identity=56.3; qcov=0.781; evalue=2.45e-172; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04873 (EIN3_DNA-bd); PF27048 (EIN3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026617 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057812513.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057812513.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057812513.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057812513.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057812513.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1613333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr5:1613391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:1613403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr5:1613463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B59 |
Chr5:1613481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B1,C58,D7 |
Chr5:1613601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:1613704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B124,B16,B40,C26 |
Chr5:1613750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr5:1613877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,C12 |
Chr5:1613928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,C16,C9 |
Chr5:1613958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C2 |
Chr5:1613994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057812513.1PF27048
EIN3_N 83-154 aa
PF04873
EIN3_DNA-bd 172-295 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812513.1 |
Pfam | PF27048 |
EIN3_N | Domain | 83 | 154 | 1.3e-45 | 153.6 | Ethylene insensitive 3, N-terminal domain |
XP_057812513.1 |
Pfam | PF04873 |
EIN3_DNA-bd | Domain | 172 | 295 | 1.7e-69 | 232.3 | Ethylene insensitive 3, DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。