当前解析结果
SmilChr05G000166| 统一新 Gene ID | SmilChr05G000166 |
|---|---|
| 名称 | SmilChr05G000166 |
| 描述 | uncharacterized SmilChr05G000166 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1322421 - 1325810 / - |
| NCBI Gene ID | LOC131026630 |
|---|---|
| GeneID | 131026630 |
| locus_tag | - |
| NCBI Name | LOC131026630 |
| 原始查询 | LOC131026630 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829499]; symbol=AT4G33590; hit=AT4G33590; species=arabidopsis; confidence=high |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829499]; symbol=AT4G33590; hit=AT4G33590; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G33590 (AT4G33590)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:829499] identity=58.1; qcov=0.93; evalue=0; confidence=high |
| Rice | Os09g0466800- identity=50.5; qcov=0.867; evalue=4.23e-132; confidence=high |
| GO | GO:0016757 (glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF04577 (Glyco_transf_61) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026630 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057812529.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057812529.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057812529.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057812529.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057812529.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1322637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B123,B87 |
Chr5:1322661 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B129,B35,B51,B82,C10 |
Chr5:1322663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr5:1322673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:1322712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr5:1322721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr5:1322733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B123,B87 |
Chr5:1322735 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | A8,B117,B37,B40,B57,B65,B75,B99,C33 |
Chr5:1322769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr5:1322784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B118,B22,B55 |
Chr5:1322805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B13,B91 |
Chr5:1323898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B67,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057812529.1PF04577
Glyco_transf_61 296-372 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812529.1 |
Pfam | PF04577 |
Glyco_transf_61 | Family | 296 | 372 | 6.4e-12 | 46.6 | Glycosyltransferase 61 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。