当前解析结果
SmilChr05G000181| 统一新 Gene ID | SmilChr05G000181 |
|---|---|
| 名称 | SmilChr05G000181 |
| 描述 | E3 ubiquitin-protein ligase RING1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1441232 - 1442862 / - |
| NCBI Gene ID | LOC131026647 |
|---|---|
| GeneID | 131026647 |
| locus_tag | - |
| NCBI Name | LOC131026647 |
| 原始查询 | LOC131026647 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase RING1-like |
| 产物 | E3 ubiquitin-protein ligase RING1-like |
| Arabidopsis | AT1G72220 (AT1G72220)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843554] identity=46.8; qcov=0.524; evalue=2.33e-45; confidence=medium |
| Rice | Os04g0450400- identity=59.1; qcov=0.248; evalue=4.09e-34; confidence=weak |
| GO | GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026647 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057812546.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057812546.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057812546.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057812546.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057812546.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1441585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B126,B23,B94,C46 |
Chr5:1441593 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr5:1441674 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:1441706 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:1441707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr5:1441728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr5:1441729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:1441748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr5:1441933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr5:1442118 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,C27 |
Chr5:1442235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,C27,C49 |
Chr5:1442284 |
C |
CG |
1bp_insertion | frameshift_variant | 12 | A19,A21,A9,B118,B13,B22,B57,B67,C25,C45,C85,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812546.1PF17123
zf-RING_11 177-206 aa
PF13639
zf-RING_2 177-220 aa
PF00097
zf-C3HC4 178-219 aa
PF13923
zf-C3HC4_2 178-219 aa
PF12678
zf-rbx1 180-220 aa
PF12861
zf-ANAPC11 184-221 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812546.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 177 | 206 | 1.9e-11 | 44.1 | RING-like zinc finger |
XP_057812546.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 177 | 220 | 1.7e-13 | 51.3 | Ring finger domain |
XP_057812546.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 178 | 219 | 9.1e-07 | 29.4 | Zinc finger, C3HC4 type (RING finger) |
XP_057812546.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 178 | 219 | 1.6e-07 | 31.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057812546.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 180 | 220 | 4.4e-09 | 37.2 | RING-H2 zinc finger domain |
XP_057812546.1 |
Pfam | PF12861 |
zf-ANAPC11 | Domain | 184 | 221 | 1.5e-06 | 28.9 | Anaphase-promoting complex subunit 11 RING-H2 finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。