Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000023`

染色体: Chr01 坐标: 436672-447883 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000023`
名称	SmilChr01G000023
描述	uncharacterized SmilChr01G000023
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	436672 - 447883 / `+`

ID 对照

NCBI Gene ID	`LOC131007161`
GeneID	`131007161`
locus_tag	`-`
NCBI Name	`LOC131007161`
原始查询	`SmilChr01G000023`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:827918]; symbol=AT4G01860; hit=AT4G01860; species=arabidopsis; confidence=high
产物	Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:827918]; symbol=AT4G01860; hit=AT4G01860; species=arabidopsis; confidence=high
Arabidopsis	`AT4G01860` (AT4G01860) Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:827918] identity=48.5; qcov=0.998; evalue=0; confidence=high
Rice	`Os03g0111800` - identity=44.4; qcov=1.01; evalue=0; confidence=medium
GO	GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0030488 (tRNA methylation)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131007161

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790302.1`
2	Nucleoplasm	核质	0.40000	`XP_057790302.1`
3	Cytosol	细胞质基质	0.20000	`XP_057790302.1`
4	Chromosome	染色体	0.00000	`XP_057790302.1`
5	Centromere	着丝粒	0.00000	`XP_057790302.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:436948`	`GCT`	`G`	2bp_deletion	frameshift_variant	1	B100
`Chr1:436948`	`GCT`	`G`	2bp_deletion	CDS_variant	1	B100
`Chr1:436977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,C44
`Chr1:436985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C6
`Chr1:437861`	`TG`	`T`	1bp_deletion	frameshift_variant	2	B20,B96
`Chr1:437861`	`TG`	`T`	1bp_deletion	CDS_variant	2	B20,B96
`Chr1:439062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:440173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:440196`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B8,C60
`Chr1:440534`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:440543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B126,B47,B9,B95
`Chr1:442192`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B80,C31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790302.1

1408 aa

704

1408

WD40

PF00400 WD40 128-163 aa PF00400 WD40 246-281 aa PF00400 WD40 305-336 aa PF00400 WD40 1320-1352 aa

XP_057790303.1

1408 aa

704

1408

WD40

PF00400 WD40 128-163 aa PF00400 WD40 246-281 aa PF00400 WD40 305-336 aa PF00400 WD40 1320-1352 aa

XP_057790304.1

1240 aa

620

1240

WD40

PF00400 WD40 78-113 aa PF00400 WD40 137-168 aa PF00400 WD40 1152-1184 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790302.1`	Pfam	`PF00400`	WD40	Repeat	128	163	6.9e-26	90.3	WD domain, G-beta repeat
`XP_057790302.1`	Pfam	`PF00400`	WD40	Repeat	246	281	6.9e-26	90.3	WD domain, G-beta repeat
`XP_057790302.1`	Pfam	`PF00400`	WD40	Repeat	305	336	6.9e-26	90.3	WD domain, G-beta repeat
`XP_057790302.1`	Pfam	`PF00400`	WD40	Repeat	1320	1352	6.9e-26	90.3	WD domain, G-beta repeat
`XP_057790303.1`	Pfam	`PF00400`	WD40	Repeat	128	163	6.9e-26	90.3	WD domain, G-beta repeat
`XP_057790303.1`	Pfam	`PF00400`	WD40	Repeat	246	281	6.9e-26	90.3	WD domain, G-beta repeat
`XP_057790303.1`	Pfam	`PF00400`	WD40	Repeat	305	336	6.9e-26	90.3	WD domain, G-beta repeat
`XP_057790303.1`	Pfam	`PF00400`	WD40	Repeat	1320	1352	6.9e-26	90.3	WD domain, G-beta repeat
`XP_057790304.1`	Pfam	`PF00400`	WD40	Repeat	78	113	2.9e-23	82.0	WD domain, G-beta repeat
`XP_057790304.1`	Pfam	`PF00400`	WD40	Repeat	137	168	2.9e-23	82.0	WD domain, G-beta repeat
`XP_057790304.1`	Pfam	`PF00400`	WD40	Repeat	1152	1184	2.9e-23	82.0	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057934319.1
AAGAAATTCAGAAATTCTTCAATACATTTACTCTTCCGAAGAAGCTGATAGCAGCGGCTGCGATCATGGCGGCAACAGAGCCTAGCCAGTGGCAGCTCCGCCGCGGGCAGTATCTAGGAGAAATATCAGCACTCTGTTTCCTCCATCTCCCCGCCAATCTCTCTTCTCTCCCTCTCCTCCTAGCTGGGACTGGCTCTCAGATTCTTGTGTATGATTTGGCGCGTGGAACGCCGCTGAAGTCGTTTGAAGTCTTCCAAGGG...

XM_057934320.1
AAGAAATTCAGAAATTCTTCAATACATTTACTCTTCCGAAGAAGCTGATAGCAGCGGCTGCGATCATGGCGGCAACAGAGCCTAGCCAGTGGCAGCTCCGCCGCGGGCAGTATCTAGGAGAAATATCAGCACTCTGTTTCCTCCATCTCCCCGCCAATCTCTCTTCTCTCCCTCTCCTCCTAGCTGGGACTGGCTCTCAGATTCTTGTGTATGATTTGGCGCGTGGAACGCCGCTGAAGTCGTTTGAAGTCTTCCAAGGG...

CDS

3 records

下载 CDS FASTA

LOC131007161
ATGGCGGCAACAGAGCCTAGCCAGTGGCAGCTCCGCCGCGGGCAGTATCTAGGAGAAATATCAGCACTCTGTTTCCTCCATCTCCCCGCCAATCTCTCTTCTCTCCCTCTCCTCCTAGCTGGGACTGGCTCTCAGATTCTTGTGTATGATTTGGCGCGTGGAACGCCGCTGAAGTCGTTTGAAGTCTTCCAAGGGATTCGTGTTCATGGGATCTCTTTGGAGAATTTTCACAAACAGTTGGCGGGTTCTGCTATTTCTTT...

Protein

3 records

下载 Protein FASTA

XP_057790302.1
MAATEPSQWQLRRGQYLGEISALCFLHLPANLSSLPLLLAGTGSQILVYDLARGTPLKSFEVFQGIRVHGISLENFHKQLAGSAISFRICIYGERRVKIFTLRVEPGSKEESFLRLELTLIHSLPKFGHWVLDVCFLKDGATASEDACYLAIGCSDNCVYFWDILRYNMYSEVKCAERCLLYSMRMFGNDIDSLRIASGTIFNEIVVWKVICQNGVKHPGSNVEDHLQLTGDEGFFYPGPDYRDDLISRLVGHEGSIFRI...

XP_057790303.1
MAATEPSQWQLRRGQYLGEISALCFLHLPANLSSLPLLLAGTGSQILVYDLARGTPLKSFEVFQGIRVHGISLENFHKQLAGSAISFRICIYGERRVKIFTLRVEPGSKEESFLRLELTLIHSLPKFGHWVLDVCFLKDGATASEDACYLAIGCSDNCVYFWDILRYNMYSEVKCAERCLLYSMRMFGNDIDSLRIASGTIFNEIVVWKVICQNGVKHPGSNVEDHLQLTGDEGFFYPGPDYRDDLISRLVGHEGSIFRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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