Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G000050`

Chromosome: Chr01 Coordinates: 772718-774115 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G000050`
Name	SmilChr01G000050
Description	uncharacterized SmilChr01G000050
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	772718 - 774115 / `-`

ID Mapping

NCBI Gene ID	`LOC131006439`
GeneID	`131006439`
locus_tag	`-`
NCBI Name	`LOC131006439`
Original query	`SmilChr01G000050`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	confidence=no_hit
Product	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF04504 (GeBP-like_DBD)
InterPro	-
eggNOG	-
NR	GeneID:131006439

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789590.1`
2	Chromosome	染色体	0.00000	`XP_057789590.1`
3	Centromere	着丝粒	0.00000	`XP_057789590.1`
4	Chromatin	染色质	0.00000	`XP_057789590.1`
5	Telomere	端粒	0.00000	`XP_057789590.1`

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EMS Mutant Variants

No curated EMS CDS / LoF variants are available for this gene yet, or the EMS database is still building.

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057789590.1

221 aa

110

221

GeBP-like_DBD

PF04504 GeBP-like_DBD 20-82 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057789590.1`	Pfam	`PF04504`	GeBP-like_DBD	Domain	20	82	9.9e-10	39.7	Glabrous-enhancer-binding protein-like family, DBD domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057933607.1
ATGTCGGCGAAAGAAAACGAGATGCGCAAGCAAGCCGTTTTCTGGGCTAGTGGTAGAAATAATAAGTGGGCAGACTTCCACCGGATCGTCAAGGACAAACTTTCCAAGCCAGATTTTACGCGCGTTCAAATATCTGAGAAGGTCCGAAGTTTGAACAAAAAGTATAAGACTAACTGGCAAAGAGGTCGCGTCCCCGACGACCCTCATGAATTGGTTGTGTATGAGTTGTCCAAGCCGTTGTGGGAAGATGAGATGAATCA...

CDS

1 records

Download CDS FASTA

LOC131006439
ATGTCGGCGAAAGAAAACGAGATGCGCAAGCAAGCCGTTTTCTGGGCTAGTGGTAGAAATAATAAGTGGGCAGACTTCCACCGGATCGTCAAGGACAAACTTTCCAAGCCAGATTTTACGCGCGTTCAAATATCTGAGAAGGTCCGAAGTTTGAACAAAAAGTATAAGACTAACTGGCAAAGAGGTCGCGTCCCCGACGACCCTCATGAATTGGTTGTGTATGAGTTGTCCAAGCCGTTGTGGGAAGATGAGATGAATCA...

Protein

1 records

Download Protein FASTA

XP_057789590.1
MSAKENEMRKQAVFWASGRNNKWADFHRIVKDKLSKPDFTRVQISEKVRSLNKKYKTNWQRGRVPDDPHELVVYELSKPLWEDEMNQESGKGMKKNKKSGLWEDEMNQESGKGMKKNKKSGLWEDEMNQESGKGMKKNKKRKRERNPTLDEFRSSYPNLYASFNMFGFPPKIARERFVLIGREKAQKLENEWKQLTEELHCLEGKRLALSTKPTGDNSEEG

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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