Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000066`

染色体: Chr01 坐标: 1073508-1077315 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000066`
名称	SmilChr01G000066
描述	zinc finger BED domain-containing protein RICESLEEPER 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	1073508 - 1077315 / `+`

ID 对照

NCBI Gene ID	`LOC131007211`
GeneID	`131007211`
locus_tag	`-`
NCBI Name	`LOC131007211`
原始查询	`SmilChr01G000066`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger BED domain-containing protein RICESLEEPER 1-like
产物	zinc finger BED domain-containing protein RICESLEEPER 1-like
Arabidopsis	`AT3G42170` (DAYSLEEPER) BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=31.7; qcov=0.898; evalue=1.12e-98; confidence=low
Rice	`Os02g0521366` - identity=34.9; qcov=0.887; evalue=3.02e-121; confidence=low
GO	GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:131007211

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790349.1`
2	Chromosome	染色体	0.00000	`XP_057790349.1`
3	Centromere	着丝粒	0.00000	`XP_057790349.1`
4	Chromatin	染色质	0.00000	`XP_057790349.1`
5	Telomere	端粒	0.00000	`XP_057790349.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:1074354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,C3,C32,C68
`Chr1:1074409`	`C`	`T`	EMS_canonical_SNV	stop_gained	48	A16,A8,B100,B11,B117,B121,B130,B136,B139,B140,B17,B2,B23,B31,B36,B38,B50,B54,B55,B59,B63,B69,B72,B76,B79,B89,B9,B90,B97,C20,C21,C26,C3,C34,C35,C36,C47,C48,C50,C57,C59,C61,C69,C73,C77,C8,D5,D8
`Chr1:1074416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:1074435`	`TAC`	`T`	2bp_deletion	frameshift_variant	179	A15,A16,A18,A19,A2,A21,A22,A23,A24,A25,A3,A4,A5,A6,A8,A9,B100,B101,B105,B106,B108,B109,B11,B110,B111,B114,B117,B118,B12,B121,B123,B126,B127,B129,B130,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B17,B18,B19,B2,B21,B22,B23,B26,B28,B31,B33,B34,B35,B36,B37,B38,B4,B40,B41,B44,B45,B46,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B58,B59,B6,B60,B62,B63,B64,B66,B67,B68,B69,B7,B70,B72,B74,B75,B76,B78,B79,B8,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B93,B94,B96,B97,B98,B99,C1,C10,C14,C15,C16,C17,C18,C20,C21,C23,C24,C26,C27,C28,C29,C3,C30,C31,C33,C34,C35,C36,C37,C38,C39,C42,C43,C44,C47,C48,C5,C50,C51,C52,C53,C54,C57,C58,C59,C6,C60,C61,C62,C65,C66,C69,C71,C72,C73,C77,C78,C8,C80,C82,C9,D1,D10,D11,D2,D3,D5,D6,D8,D9
`Chr1:1074449`	`C`	`CAA`	2bp_insertion	frameshift_variant	6	A3,B100,B87,B99,D10,D9
`Chr1:1074462`	`C`	`CA`	1bp_insertion	frameshift_variant	36	A15,A25,A3,A4,A5,A7,B100,B114,B123,B126,B127,B133,B15,B33,B49,B51,B52,B53,B67,B69,B70,B86,B87,B9,B90,B99,C1,C16,C24,C28,C44,C51,C65,C80,D10,D9
`Chr1:1074467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B133,B2,C52
`Chr1:1074471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B113,B68,B83
`Chr1:1074527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B54,C64
`Chr1:1074539`	`ATT`	`A`	2bp_deletion	frameshift_variant	1	D4
`Chr1:1074539`	`ATT`	`A`	2bp_deletion	CDS_variant	1	D4
`Chr1:1074584`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B118,B133,B80,C65,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790349.1

714 aa

357

714

ZBED1_RNase-like

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF27041 ZBED1_RNase-like 232-329 aa PF27039 ZBED1_RNase-like_helical 332-440 aa PF14372 hAT-like_RNase-H 461-555 aa PF05699 Dimer_Tnp_hAT 605-689 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790349.1`	Pfam	`PF27041`	ZBED1_RNase-like	Domain	232	329	2.8e-31	108.2	ZBED1 RNase-like domain
`XP_057790349.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	332	440	2.3e-32	112.0	ZBED1 RNase-like helical domain
`XP_057790349.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	461	555	3.9e-29	101.5	hAT-like transposase, RNase-H fold
`XP_057790349.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	605	689	3.9e-24	85.0	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009095969.1
CTCGGTTGCCGGCGACCGGCGACACGCACTCCGGCGCGACGGCACACTCCGACACGACGGCGGCTCATCTTTCCAGCGAAGATCCGACGATCTTAACAGCAGCAGCAGTGAAGATCCGACGATCTTAACAGCAGCAGCAGTGCAGCAGTGCCACCACCGTTCACCGGGCACCGACTGCTTCCCAGCTCGGCGCGACAATAGCAGCGACACCAACGGCTCTCCCCTCCTCGGCGCGACAGCAGCAGTGCAGCACGATCTGC...

XM_057934366.1
ATTTTATTTCAGTTGATAATGGCATCCTCTCCTCCCGAAGTCTCCTCAACAATGCCCAATGCAGTAACATCTCAAAACTCCATTGACAATCAGCTTTCAACGGATGATCATATTGTTACAAATTCATCATCAAATGCCAATGACAATACTGACATTGAAGGTGGAAGTGGAGATGGTGAAACAGGTGGAAGTGGAGATGGTGAAACAAGAGCAGAAGATGATTTGAGCTTTCAGCCGAAGAAAAGACAAAAGACATCAAA...

CDS

1 records

下载 CDS FASTA

LOC131007211
ATGGCATCCTCTCCTCCCGAAGTCTCCTCAACAATGCCCAATGCAGTAACATCTCAAAACTCCATTGACAATCAGCTTTCAACGGATGATCATATTGTTACAAATTCATCATCAAATGCCAATGACAATACTGACATTGAAGGTGGAAGTGGAGATGGTGAAACAGGTGGAAGTGGAGATGGTGAAACAAGAGCAGAAGATGATTTGAGCTTTCAGCCGAAGAAAAGACAAAAGACATCAAAAGTTTGGTTGGAGTATAA...

Protein

1 records

下载 Protein FASTA

XP_057790349.1
MASSPPEVSSTMPNAVTSQNSIDNQLSTDDHIVTNSSSNANDNTDIEGGSGDGETGGSGDGETRAEDDLSFQPKKRQKTSKVWLEYNVIDDVNKAECKHCRSRLSILKSKSTTHLSRHLACCLKRKLHQKQQQKISLEPINENSVSMASIALTDGKFDMRKMREAIAHWILMHEHPFTIVEEEGFNMMQKRAALEWEKVSRNTIKKDCTQVYDIERKKLMAQLKSINKISVTTDLWRSTNQKIEYMVLTGHFVDSCWKLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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